Phaeodactylum tricornutum: PHATRDRAFT_12420
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Entry
PHATRDRAFT_12420 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti00061
Fatty acid biosynthesis
pti00071
Fatty acid degradation
pti01100
Metabolic pathways
pti01212
Fatty acid metabolism
pti04146
Peroxisome
Module
pti_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
PHATRDRAFT_12420
00071 Fatty acid degradation
PHATRDRAFT_12420
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PHATRDRAFT_12420
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pti01004
]
PHATRDRAFT_12420
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pti04147
]
PHATRDRAFT_12420
Enzymes [BR:
pti01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
PHATRDRAFT_12420
Lipid biosynthesis proteins [BR:
pti01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
PHATRDRAFT_12420
Exosome [BR:
pti04147
]
Exosomal proteins
Exosomal proteins of breast milk
PHATRDRAFT_12420
Exosomal proteins of breast cancer cells
PHATRDRAFT_12420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-GeneID:
7201128
NCBI-ProteinID:
XP_002180281
JGI:
12420
UniProt:
B7FZ42
LinkDB
All DBs
Position
8:complement(630722..632891)
Genome browser
AA seq
633 aa
AA seq
DB search
LIGKLHTMRDTLRNCPQLWTELSRNCGDKRALLDEHMCDDKVDVTFAEMNTIVRKSAAVF
QSLGVKPGVNVAILGENSARWLMVDHGIQMAGGASAVRGADAPLDELRYIYEQSDSAGIV
VVQGPKLLEKLASDASAKGMHRLGEELTKMVDKYGLTVRVFADLLEEVQPVTDEQIPVLG
RDDLATIVYTSGTTGRPKGVMLTHGNLIHQIGHRVGTETRYDESEPLPDETMLSLLPVWH
ITERSFELWMLARGCNVVYSSIRTFKNDLAKHRPEWAVLVPRVLEKIATGVQDKFSSGSL
PVKLLSKLFTSTSKAAAKHRKITQGYVVGEQPPGAMEKLASKALLVALSPLNAVGNKIVW
SKVQNGFGGRMRTIMSGGSALSGSLEEFYEAAGLTIIVAYGLTECAPLISHRRRDANLVT
GGCVGTACIDTELRVVSPESKASTTPRPALPAGEVGVVIARGPQIMKGYYKDVAETKKAI
DQFGFFDTGDLGRVNPATGDLILTGRAKDTIVLSNGENVEPGPLEDAILGELSLIEQVML
TGQDGRKLTAIVVLSPSELANEGFLSKDEGALMQKRNEQVNDPKSTKRFQKWEQVKDVYV
TLEPFAMANGQLTQSYKVKRPFVLERYEDELSK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
cttattggaaaactccatacaatgcgtgataccctacgaaattgtccccagctctggacc
gaactctcccggaattgtggcgacaaacgagctctcctcgatgaacacatgtgtgacgac
aaggttgatgttacgtttgcggaaatgaatactatcgtacggaaaagtgcggccgtcttt
cagtcacttggtgtaaaaccaggcgtcaacgttgccattttgggcgaaaattcggctcgt
tggctcatggtcgaccacggcatccaaatggccgggggcgcgtcggctgtccgcggagcc
gacgcaccgctggacgaattacggtatatttacgagcaatccgactcagcagggattgtg
gtagtacagggacccaaactgttggaaaaattggccagcgatgcaagcgcgaaaggaatg
caccggttgggtgaggagcttacaaagatggtagacaagtatggtctcaccgttcgggtc
tttgccgacttgctggaggaagtgcagccggtgacagacgaacaaatcccagttttggga
cgcgatgatttggcgacaatagtctataccagtgggacgactgggcgacccaaaggtgtt
atgctcacacacggcaacttgatccatcaaattggacaccgagttggcaccgaaacgaga
tacgatgaatcggagcccttgccggacgaaaccatgctttcgcttcttccagtctggcat
atcacggagcgatcgttcgaattgtggatgctggcacgaggatgcaacgtggtatattcc
tctattcggaccttcaaaaatgatttggccaagcatcggccagagtgggccgtgttggta
ccgcgagttctagaaaagattgcgaccggagtacaagacaagttttcttcgggaagcttg
cccgtaaagcttctctccaaactgttcaccagcacaagcaaagcagctgccaagcatcga
aaaatcactcaggggtatgtggttggtgaacaacccccgggagcgatggaaaagttggct
tcaaaagcactacttgtggccttgtctcctttgaatgctgtcggcaacaaaattgtttgg
agcaaagtacagaatggcttcggcggacgtatgaggacaatcatgtctggtggtagtgca
ctgtcgggatctttggaagaattttacgaagccgctggcctaactattattgtggcttat
ggactgacggaatgtgcaccattgatttcgcatcgacggagggacgccaaccttgtcacg
ggcggatgtgtcggaacggcttgcatcgatacggaactccgagtggtgagcccggaaagt
aaggcatcaactactccacgacccgccttgccggctggcgaagtgggtgtggttattgcc
cggggtccgcaaataatgaaaggctactacaaagatgtggccgaaaccaaaaaagcaatc
gatcaatttggatttttcgatacgggtgatcttgggcgagtgaacccagcaacaggtgac
ctgattctgactggtcgagccaaagacactattgtgctttccaatggtgagaacgttgaa
cccggtccgcttgaagacgccattctgggtgaattgtcgctgatagagcaagtgatgttg
acgggtcaagacggaagaaaactaaccgcgattgtcgtactgagcccctcagaactcgcg
aacgaaggattcttgtccaaggatgaaggcgccttgatgcaaaaacggaacgaacaagtg
aacgacccgaaatcaacgaaacggtttcaaaaatgggaacaagtaaaagacgtgtatgtt
acgttagaaccgtttgccatggcgaacggtcaacttacacaatcctacaaggtaaagcgg
ccttttgtgttggagcgatatgaggacgagttgtcgaagtaa
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