Phaeodactylum tricornutum: PHATRDRAFT_13053
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Entry
PHATRDRAFT_13053 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_13053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_13053
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_13053
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PHATRDRAFT_13053
Spliceosome [BR:
pti03041
]
Complex B
Other components
Prp19-related factors
PHATRDRAFT_13053
Complex C
PHATRDRAFT_13053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_C
HAT_PRP39_N
TPR_9
NRDE-2
TPR_CcmH_CycH
TPR_2
Suf
TPR_15
ARM_TT21_C
DUF1572
Motif
Other DBs
NCBI-GeneID:
7201626
NCBI-ProteinID:
XP_002180942
JGI:
13053
UniProt:
B7G0Y2
LinkDB
All DBs
Position
10:complement(98507..101014)
Genome browser
AA seq
725 aa
AA seq
DB search
EDETRQHPYDVERWLVYLDAVDDWMVTDQQSPSFRRLVGQWIGQRALCRLPRSYKLWKRH
WEFLVDTLSLLDDDDSNDNDDNNNNTTSVVVAFERALVTLSAYPRVWVAYIDFLRTHPGC
CSVTHVRRTVNRALQTVAIAQHEKVWPGIVEWFGTEPHDDTTPTPRWTLPLETRVRILQR
YVTFQPRYGRDLCDFLGRHGLWGQAAVAFQRLWNANPASTRSVELLATDSGSSSAAAVTT
HTATTARNDRSTIRPDLDDTAWADFCPLVWTSLADAWIRQGLFDLARSVYEEGLQKVHTI
RDFSILYNAYLTLEEGLLEAAVATHLTSRRPLLLNAVLLRQNPHHVGEWLERAKLYQSVN
QPGQATATLEEALRTVVANKAVHGRPSELVAALSNLYETVRNDAAAARSMLERICVHHGY
AFAKTDDLAECWATWVELELKQEAWDDALLLARQAVAVGSGTRKLHLTQSLRLWDLLLDL
EESLGTTQTTKDAYNRALEIKAATVQHVLNYGTFLTEQKYFEESFTAYERGIELFAFPHA
GAKLLWKAYLEAFLDRYQGTKVERARDLFQRCLEACPAEDAADFYMMNGEFEETYGLTRR
ALSVYRAMCHRVPKEERLVAYQLYVAKTIRYLGVTATRDIYQEAIENLADKDSSKLCVEF
AKMETGLEQLDRARAIFTYGAQMADPRRLPEYWKTWNEFEIAHGNEETFREMLRVKRSVE
AAFST
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gaagacgagactcgtcaacacccgtacgatgtggaacgttggcttgtgtatctcgacgct
gtcgacgattggatggtcaccgatcagcagtccccgtcgttccggcgtctcgtgggccaa
tggattgggcaacgcgcactctgccggttgccccggagttacaaactctggaaacggcac
tgggagtttctcgtcgatactctttctttactagacgacgacgacagtaacgacaacgac
gacaacaacaacaacactacgtccgtcgtggtagcctttgaacgggcgctcgtcaccttg
tcggcctacccccgggtatgggttgcctacatcgactttttgcggacccatccgggatgt
tgttccgttacccacgtgcgtcggaccgtcaatcgcgcgctacagacggtcgcaatcgcc
caacacgagaaagtctggcccgggatcgtggaatggttcggaaccgaaccgcacgacgac
accacgccgacgccccgctggaccctgcctttggaaacacgcgtacgcatcctacaacgt
tacgttaccttccaaccccgctacggacgagacttgtgcgatttcctcggacgacacgga
ttgtggggacaagctgccgtggcctttcaacgcttgtggaacgccaatccggcaagtaca
cggagtgtggaattgttggctaccgatagtggtagtagcagtgcggctgccgtcacgaca
cacactgccaccactgctaggaacgacaggtccacgatacgacccgacctggacgatacg
gcctgggccgacttttgtcccctcgtttggaccagtctggccgacgcatggattcgacaa
ggcctcttcgatctggcacggtccgtctacgaagaaggcttgcagaaggtacacacgata
cgagatttttccatcctctataacgcctaccttaccttggaagaaggcttattggaagcg
gccgtcgccactcatttgacgtcccgacgaccgctcttgctcaacgcggttctcttacga
caaaatccgcaccacgtgggggagtggctggaacgcgccaaactctaccagtcggtaaat
caacccggacaagccacggccacgctcgaagaagccttgcgcacggtcgtggccaacaag
gccgttcacggccgtccgtcggaactcgtggccgccctctccaatctgtacgagacggtc
cgcaacgacgcggccgcggctcggtctatgctggaacgtatttgtgtccatcacggctat
gcctttgccaaaacggatgatctagccgaatgctgggccacgtgggtagaactggaactg
aaacaagaagcttgggacgacgccttgttgttggcccgacaggccgtcgctgtcggatcc
ggtacgcggaaactccatctgacacagtcactacggctctgggatctcttgttggatttg
gaggagagtttggggacaacgcagactaccaaggacgcctacaaccgtgccttggaaatc
aaggcggccaccgtccaacacgtattgaattacggtacgtttttgacggaacaaaaatat
ttcgaagaatcttttacggcctacgaacgcggtattgagctctttgcctttccacacgcc
ggggccaaactcttgtggaaagcctatctcgaagcttttttggaccggtaccagggcacc
aaagtagagcgagcacgagatttgttccaacgctgtctggaggcgtgcccggccgaggac
gctgccgacttttacatgatgaacggagagtttgaagaaacctacggtctgacacggaga
gcgctttcggtgtatcgtgccatgtgccacagggtgccgaaggaagagcggctggttgcg
taccaactgtacgttgccaaaaccatccggtacctgggtgtgaccgccacgcgtgatatc
tatcaggaagcgatcgaaaatttggccgacaaggattcgtcaaaactttgcgtcgaattc
gcgaaaatggaaacgggactggaacaactggaccgcgcccgggcaatctttacgtacggg
gcacaaatggccgatccgagacgcttgccagaatactggaagacgtggaacgagttcgag
attgcccacggaaacgaagaaacgtttcgcgaaatgttacgagtgaagcggtccgtggaa
gccgcattctccacg
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