Phaeodactylum tricornutum: PHATRDRAFT_14457
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Entry
PHATRDRAFT_14457 CDS
T01075
Symbol
RPA1
Name
(RefSeq) replication protein a large 70 kD subunit
KO
K07466
replication factor A1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03030
DNA replication
pti03420
Nucleotide excision repair
pti03430
Mismatch repair
pti03440
Homologous recombination
pti03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHATRDRAFT_14457 (RPA1)
03420 Nucleotide excision repair
PHATRDRAFT_14457 (RPA1)
03430 Mismatch repair
PHATRDRAFT_14457 (RPA1)
03440 Homologous recombination
PHATRDRAFT_14457 (RPA1)
03460 Fanconi anemia pathway
PHATRDRAFT_14457 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pti03000
]
PHATRDRAFT_14457 (RPA1)
03032 DNA replication proteins [BR:
pti03032
]
PHATRDRAFT_14457 (RPA1)
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_14457 (RPA1)
Transcription factors [BR:
pti03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
PHATRDRAFT_14457 (RPA1)
DNA replication proteins [BR:
pti03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
PHATRDRAFT_14457 (RPA1)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
PHATRDRAFT_14457 (RPA1)
MMR (mismatch excision repair)
PHATRDRAFT_14457 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
PHATRDRAFT_14457 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
OB_MEIOB_N
DUF5633
PHD_2
Motif
Other DBs
NCBI-GeneID:
7203231
NCBI-ProteinID:
XP_002182265
JGI:
14457
UniProt:
B7G5L2
LinkDB
All DBs
Position
15:631178..633225
Genome browser
AA seq
606 aa
AA seq
DB search
MTGNGGGPSFSPILQVLDTKQVPGPQGSVRYRIVLSDGKHYIQGMLATQLNHMIATNLIG
ANTIVQVEQFMSNRVKDRTVIILLNVHALRNEPSRIGDPQDIEKAQIATPGTNYATGSSV
PPVKTGSPNPYGGPSRNPHHASPVRSSHAPIVRDTVNGTPITNISNLNMYANKWTIQARV
TSKSDIRTWSNAKGEGSLFSVELLDQTQDVRATFFKEAVDKFYSFLQIGSVYTFSGGRLK
VANAQYNTCQSNFEITFDQNSEIHLANDDGNIQRQHYEFIDSIAGLERTEPNTMVDLLAV
VQAVGEVATIVSKKSGQELTKCDLTLIDTSATQITLTLWGDKAASALTDYNQQPVVAIRR
ARVSDYGGRSLSLSGSIETNPDIPQTAPLQTWWRTQTANGGVTGKSLSATRGGAGVMESL
EQRQTIADIKNNNLGYAGDKPDWLTFKATVSFLKKDKEGGSWYPACANAGEPCKNRYKVT
QTTDGNWYCDKCQGSFPTCVRRWIFSGVVEDDTSSTWVSFFNEQAETLLAGATADQVYAE
TYQDQQDQDAYDSYFAKANHTEWIFKCKVKNEMVNEESRVKTSVVAMQPVDFAKESRDLL
SALAKF
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacgggcaacggcggaggaccttccttcagtcccatcctccaagtcctcgataccaag
caagttccgggaccccaaggaagtgtgcgctatcggattgtcctgtccgacggcaagcac
tacattcaaggcatgctcgcgacccaactgaaccacatgattgctactaatctcattggt
gccaacacgatagtgcaagtcgagcaattcatgtccaatcgcgtcaaggaccgcaccgtc
attattctcctcaacgtgcacgccctccgcaacgaaccctcccgcattggggacccgcag
gacattgaaaaggcgcaaattgcaaccccgggaaccaattacgccaccggaagctccgtc
ccacccgtcaagaccgggagtcccaatccctacggaggtccttcccgaaacccacaccac
gcttcccccgtgcggtcctcccacgcaccgattgtacgcgataccgtgaacggaacaccc
atcaccaacattagcaatctcaacatgtacgccaacaagtggaccattcaagcccgcgtt
acttccaaatcagatattcgcacctggtccaacgccaaaggcgaaggtagcctcttttcc
gtcgaactactcgatcaaacgcaggatgtccgggctaccttcttcaaggaagccgtcgac
aagttctacagctttttgcagatcggatccgtctacacattttccggtggacgtctcaag
gtcgccaacgcacagtacaatacctgccagagcaatttcgaaatcacttttgatcagaac
tccgaaatacacctcgccaacgacgacggaaatatacaacggcagcactacgaattcatc
gacagcatcgccggtctggagcgtaccgaacccaacaccatggtggatctgctcgccgtc
gtacaggcggtcggagaagtcgccacgattgtcagcaaaaagtcgggccaggagctcacc
aagtgcgatttgaccctcatcgacacctccgccacgcaaatcaccctcactctctgggga
gacaaggctgcctcggcactcaccgactacaaccaacaacccgtcgtcgcgatccggcgc
gcacgcgtcagcgactacggcggacgtagtctctccctctccggatccatcgaaaccaat
ccggacattccccaaaccgcgcccttgcaaacgtggtggcggacccaaaccgccaacggc
ggtgtcaccgggaaatctctatccgccacccgcggcggagccggcgtgatggaaagtttg
gaacaacgacaaaccattgccgacatcaagaataacaatctgggttacgccggcgacaag
cccgattggctgacgttcaaggccaccgtttcctttttgaaaaaagacaaggaggggggt
tcgtggtacccagcctgtgccaacgccggggaaccctgcaaaaaccggtacaaggtcacg
caaacgaccgacggcaactggtactgcgacaagtgtcaaggctcgtttcccacctgcgtc
cggcgctggatcttttccggggtcgtcgaagacgacaccagctctacctgggtcagtttc
ttcaacgaacaggccgaaacactgctcgccggcgccacggccgaccaagtctacgccgag
acctatcaggatcagcaagatcaggacgcctacgactcgtactttgccaaggccaaccac
acggaatggatcttcaaatgcaaggtcaagaacgaaatggtcaacgaagaatcccgcgtc
aaaaccagcgtcgtggccatgcaacccgtcgactttgccaaggaatcccgcgatctcctg
tcggccctggccaagttttaa
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