KEGG   Phaeodactylum tricornutum: PHATRDRAFT_15233
Entry
PHATRDRAFT_15233  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03008  Ribosome biogenesis in eukaryotes
pti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PHATRDRAFT_15233
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATRDRAFT_15233
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_15233
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_15233
   03009 Ribosome biogenesis [BR:pti03009]
    PHATRDRAFT_15233
   03016 Transfer RNA biogenesis [BR:pti03016]
    PHATRDRAFT_15233
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PHATRDRAFT_15233
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     PHATRDRAFT_15233
Ribosome biogenesis [BR:pti03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PHATRDRAFT_15233
Transfer RNA biogenesis [BR:pti03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    PHATRDRAFT_15233
SSDB
Motif
Pfam: XRN_N
Other DBs
NCBI-GeneID: 7194702
NCBI-ProteinID: XP_002183154
JGI: 15233
UniProt: B7G7J6
LinkDB
Position
18:complement(<97658..>98110)
AA seq 151 aa
MGVPKFFRWLSERYPKVIQRHGCPPNAETTQEHFGTDPPANMPKPDPLSTCGLAPEIDRL
YIDMNGIIHGCSHNNSEAEENGEEGVANISEDEIFRNICYYLDRVVKDIAKPKQLVYMAI
DGVAPRAKLNQQRSRRYRSGKEGEIERTVYD
NT seq 453 nt   +upstreamnt  +downstreamnt
atgggagttccaaaattctttcgttggctttccgagcgctaccccaaggttatccagcgg
catggctgtccgcccaacgcagaaacgacgcaggagcattttggcaccgatccgcccgcg
aacatgccgaagcccgatccattgtcgacttgcggtctagcccccgaaatcgatcgcctt
tacatcgacatgaatggaatcattcacggctgttcgcacaataacagcgaagccgaagag
aacggggaagaaggtgttgccaatatttcggaagacgagatttttcgcaatatctgctat
tatctggatagggtcgtcaaggacattgccaagcccaagcaactcgtgtacatggcaatt
gatggtgtagcgcccagagccaaactcaatcaacagcggtcccgtcgctatcgttcggga
aaagaaggtgagattgagcggaccgtctacgat

DBGET integrated database retrieval system