Phaeodactylum tricornutum: PHATRDRAFT_15508
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Entry
PHATRDRAFT_15508 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHATRDRAFT_15508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_15508
Enzymes [BR:
pti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
PHATRDRAFT_15508
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PHATRDRAFT_15508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
nSTAND3
FtsK_SpoIIIE
AAA_16
MMR_HSR1
KTI12
AAA_10
Motif
Other DBs
NCBI-GeneID:
7195237
NCBI-ProteinID:
XP_002183556
JGI:
15508
UniProt:
B7G903
LinkDB
All DBs
Position
20:131157..132659
Genome browser
AA seq
461 aa
AA seq
DB search
TLAPEEELRIEVPFQKQTACIITLQKGSAELYGVELALHKSYTFPEGGLKIAVFTWHGCV
LDVDVHVNTHAQLEALRDQAAAGFAPQHSTNNDTSGVPATLGPRVLVVGPPESGKSTVTK
TLLAYAVKLGRLPLWVDLDPVDNGISIPGTLAACPVTRDTVTIESWATTGIPSHATTAST
SSRPLPDLFRAQVTALGQKINARLAGDELAYSSGIIVNTNGWIQEEGFQLLMHTVEALQI
SVVLVLGHDKLYSMFKSQSKLQQETPQTTQQPRQDWKVIKLPRSGGVATRDAGFLRSCKS
RALKRYFYGELIESSNQKTSISSTNAASAVNATPASRVPQLTPFLIQLPWGDLTLYKLSS
MTLSASLLPVAAAQTTEAVQITRISQLADVSAQTILAVCHPQAVVTYEKSQDAADLYTSG
VAGFVNVERIVAETETLHLLTPCAGTLPSMTLIWGNISWME
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
acactggctccagaagaggaacttcgtatcgaagtcccatttcaaaagcaaactgcctgt
attataacgctccagaaaggctcggcagaattgtacggcgtcgaactcgccttgcacaaa
tcgtacacctttcctgaaggcggtctcaaaattgccgtctttacctggcacggctgcgtt
ctcgatgtggacgtccacgtgaatacgcacgcgcagttggaagcgctccgtgaccaagct
gccgctggctttgcacctcaacactccaccaacaacgacacgagtggtgtaccggcgact
cttggtccacgcgtactcgtggttggaccgcctgaatccgggaaatccaccgtcactaaa
acgctattggcctacgccgtcaaactgggacgacttccactatgggtagacctcgatccc
gtggacaacggcatcagcattccgggaaccttggcggcgtgccccgtgacccgggacacc
gtcacgatcgaatcttgggcaacgaccggtattccctcccacgccaccacagcgtccaca
tcctcacgacccttgccagacttgtttcgtgcccaagttacggcgttgggtcaaaaaatt
aatgcgcgactcgccggggacgaattggcctattcttccggtataattgttaatactaac
ggatggattcaggaggaaggctttcagctcctaatgcacaccgttgaggccctccaaata
tccgttgtattggtattaggccacgataaactatacagcatgttcaaaagccagagcaaa
ctccaacaagaaacgccacaaacaacacagcaaccacgacaggattggaaagtcatcaag
ctacctcgttcggggggcgtcgccacacgcgatgcaggatttttgcgctcttgcaaatcg
cgagcactgaagcgttacttttacggcgagttgatcgagtcgagcaaccaaaagaccagc
atctcgtctaccaacgctgcatctgctgtcaacgcaacccccgcatcgcgcgttccacaa
ctcacaccctttctcattcaactgccttggggtgatttgaccctttacaaactttcctcc
atgaccttgtcggcgtcactcttgcctgtggccgccgcccaaaccaccgaagccgttcag
attacccgaatctcacagctagccgatgtttcggcacaaacaattttagccgtttgtcat
ccccaagctgtggtaacgtacgaaaagtcgcaggatgcggccgatctatacacgtcgggg
gtggcaggtttcgtgaacgtagaacgtattgtggccgaaaccgaaacactccatttacta
actccctgtgccgggactttaccatccatgacactaatatgggggaacatatcctggatg
gaatag
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