Phaeodactylum tricornutum: PHATRDRAFT_17862
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Entry
PHATRDRAFT_17862 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_17862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_17862
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_17862
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHATRDRAFT_17862
Spliceosome [BR:
pti03041
]
Complex A
U1 snRNP components
U1 related factors
PHATRDRAFT_17862
Complex B
PHATRDRAFT_17862
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
Pre-60S particles
Helicases
PHATRDRAFT_17862
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
7196907
NCBI-ProteinID:
XP_002176921
JGI:
17862
UniProt:
B7FQS8
LinkDB
All DBs
Position
1:2160626..>2163198
Genome browser
AA seq
529 aa
AA seq
DB search
MSYYGGGSGGGGYRDSGGYGGGPGAGGGGYGGGGAYGGGGGAYGAGGGYGGGGGGGYGGP
PMGGGGAYGSSNLGATLGSIDFSKTELVQFEKDFYIEHPDVRARSDQEADAWRASKQIVV
RGHDVPKPVMTFDEASMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGK
TLAFLLPAMIHINAQPYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGG
VKKHTQLRELRAGAEICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRK
IVSQIRPDRQVLMWSATWPKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMD
KYRNLQRYLRENLSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALR
EFKGMQSTLLVATDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFF
VPDKNARLARELVDILNRTSQNVPQELQALTSFSGGRGGGGRGRGGRRY
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtcatattacggaggcggcagcggcggaggcggatatcgcgattcgggtggatacggt
ggaggtcccggagcaggaggcggtggctacggaggaggaggagcgtacggaggtggggga
ggagcgtacggcgccggaggcggctacggcggtggaggaggaggtggctacggcggtccg
cccatgggaggtggcggtgcctacggcagctccaacctcggtgctacgcttggatccatt
gactttagcaagacggagctcgtacagttcgaaaaagacttttatattgaacatcccgac
gtgcgtgcccggagcgatcaggaagccgacgcctggcgggcttcgaaacaaatcgtggtg
cgcggacacgatgtgcccaaacccgtcatgactttcgacgaagcttccatgccggaatac
gtgctgaacgaagtgctcaagtgtggattcgacaagcccacgccgattcaaagccagggt
tggcccatggccttaaagggacgcaacatggtgggcgtgtccgccaccggatccggtaaa
acgttggcgttcctcttgcccgccatgattcacatcaatgcccagccgtatttgaaacca
ggtgatggtcccattgttctcgtgttggcccccacccgtgaattagccgtgcaaatcaaa
gaagaatgtgacaagtttggtagttcgtccgaaatcaaaaataccgttgtttacggtgga
gtcaaaaagcacacgcagcttcgcgagttgcgtgcgggagccgaaatttgcatcgccacg
cccggacgtttgattgatcacttggagcagggcaacactaatctcaaacgcgtcacgtac
ctggtcttggacgaagctgatcgcatgttggatatggggttcgagcctcaattgcgcaag
atcgtctcacagattcgtcccgatcgtcaggtgctcatgtggagcgcgacctggccaaag
gaagtccaggccttggcgaacgactaccttcaagacttttaccaagtcacagtcggttct
ctggatctatcagccaacaaggatgtgacgcaaattattgaagtgtgcacggacatggac
aagtatcgtaacctacagcgttatttgcgcgagaaccttagtcccaaagatcgtgtcctg
gtttttgtggaaacgaagaagggatgcgacatgctcacacgttccttgcgctctgacggt
tttcaagctcgtgccatgcacggagacaaatctcaggaagagcgtgattgggcgttgcgt
gaattcaagggtatgcaaagtacacttctggtagctacggatgttgctgcgcgtggattg
gatgttgacgatatccgtattgtagtaaactttgattttcccaaggagatggatagctac
attcaccgtgttggccgtaccggacgtgccggtaagaaaggtttcgcagtgtctttcttt
gtccccgacaagaacgctcgtctggccagggaactggttgatatcctcaaccgcacgtcc
cagaatgtccctcaggagctccaagccttgaccagcttttctggtggccgtggaggggga
gggcgtggtcgtggtggtcgacgctactag
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