Phaeodactylum tricornutum: PHATRDRAFT_17948
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Entry
PHATRDRAFT_17948 CDS
T01075
Symbol
NURF-55
Name
(RefSeq) chromatin assembly factor subunit c
KO
K10752
histone-binding protein RBBP4
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03082
ATP-dependent chromatin remodeling
pti03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PHATRDRAFT_17948 (NURF-55)
03083 Polycomb repressive complex
PHATRDRAFT_17948 (NURF-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_17948 (NURF-55)
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
PHATRDRAFT_17948 (NURF-55)
Histone modification proteins
HAT complexes
HATB complex
PHATRDRAFT_17948 (NURF-55)
HDAC complexes
Sin3A-HDAC complex
PHATRDRAFT_17948 (NURF-55)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
PHATRDRAFT_17948 (NURF-55)
PRC2.2
PHATRDRAFT_17948 (NURF-55)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
PHATRDRAFT_17948 (NURF-55)
Heterochromatin formation proteins
Other heterochromatin formation proteins
PHATRDRAFT_17948 (NURF-55)
Chromatin remodeling factors
NuRD complex
PHATRDRAFT_17948 (NURF-55)
NuRF complex
PHATRDRAFT_17948 (NURF-55)
NuRF complex (fruit fly)
PHATRDRAFT_17948 (NURF-55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
MIOS_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
WD40_Gbeta
WD40_RFWD3
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WD_LRWD1
Beta-prop_WDR41
Beta-prop_RIG_1st
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_DCAF12
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
7196597
NCBI-ProteinID:
XP_002177516
JGI:
17948
UniProt:
B7FR44
LinkDB
All DBs
Position
1:complement(<2437139..2438830)
Genome browser
AA seq
466 aa
AA seq
DB search
MTPSTTAPAAASHSSKNGTTSSSKTPLQTDVLEERLIDAEYKIWKKNTPFLYDFVMTHSL
EWPSLTTQWLPKTHTAGPNATEHSLLIGTHTTGEQNYLMMATCALPKEQPVVPADNTTVK
QPAPRYDEEKNEIGGFGLAHSAVGKIDIKVKIQHLGEVNRARYMPQNHFIVASRGPNPEV
YIFDLSKHPSVPSPQSTFCPQAVCVGHASEGYGMVWSPHQAGLLATASDDQTVKVWDVNT
VLQSPPSTGTDSGGIQVAAHATLSAHQATVEDVDWHAHDPNMLASVGDDQLLAIWDLREP
SKPLRSKPNAHDRDVNSVAFCPHDEYRLATGSADHDIAIWDLRNLDTRLHTLKSHTDEVY
NLSWAPHAEGVLASCSADRRVGVWDLSRIGMEQSVEDAEDGPPELLFLHGGHTSKVSDFS
WNVKDPWTIASVAEDNILQVWKMAEEIYVLENEEELPDESDEEDLE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgacgccttcgacgacggctcctgctgcggcatcgcattcctctaagaacggcacaacg
tcgtcctccaagactcctttgcaaaccgacgttttggaagaacgcttgatagacgccgag
tacaagatttggaaaaagaacacgccctttctctacgatttcgtcatgacgcacagtctc
gaatggccatccttgacgacgcagtggcttcccaagacgcacacggcgggtcccaacgcc
acggaacattccttactcatcggtacgcacaccaccggcgaacagaactatctcatgatg
gcgacctgtgctttacccaaggaacaacccgtggtacccgccgataatacaaccgtcaaa
caacccgcaccgcgttacgacgaagaaaagaacgaaatcggtggctttggcctcgcccat
tccgctgtaggaaaaattgacatcaaagtcaaaatacagcatctgggagaagtcaaccgg
gctcgttacatgccacagaaccatttcattgtcgcttcccgcggtcccaatcccgaagtt
tacatctttgacctttccaaacacccctccgtgccgtctccgcaatccaccttttgccca
caggctgtctgtgtcggacacgccagtgagggctacggcatggtttggtccccccatcaa
gccggtctcctcgcaaccgccagtgacgatcaaaccgtcaaggtgtgggacgtgaacact
gtactccaatctccaccaagtaccgggacggacagcggtggaatccaagtcgccgcccat
gccacactatcggcgcatcaagcgaccgtcgaagacgtcgattggcacgcacacgatccc
aacatgctggcatccgtcggtgacgatcaactcctcgccatttgggatttgcgggaacct
tcgaaaccgctacgctccaaacccaacgcccatgatcgggacgttaacagtgtcgccttt
tgtccgcatgacgagtatcgactcgcgaccggtagtgctgaccacgacattgccatttgg
gatttgcgcaatctcgatactcgtctccacacgctaaaatcgcacacggacgaagtttac
aacctttcttgggccccgcacgccgaaggcgtactcgcttcatgctcggccgaccgacgc
gtgggtgtctgggacttgtcccgcatcggtatggagcaaagcgtagaagacgccgaagac
ggtccgccggaactgctctttctgcacggagggcacaccagtaaggtttccgactttagt
tggaacgtcaaagatccctggaccattgccagtgtcgccgaagacaatatcttgcaggtc
tggaaaatggccgaggaaatatatgttttggaaaatgaagaagaacttccagacgaatcg
gacgaggaagacttggaatag
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