Phaeodactylum tricornutum: PHATRDRAFT_18258
Help
Entry
PHATRDRAFT_18258 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHATRDRAFT_18258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_18258
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PHATRDRAFT_18258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Utp12
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_Gbeta
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
CFAP251_N
NBCH_WD40
Beta-prop_TEP1_C
DSE1_N
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
ASA1
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
7197481
NCBI-ProteinID:
XP_002178040
JGI:
18258
UniProt:
B7FSU3
LinkDB
All DBs
Position
2:complement(959674..963459)
Genome browser
AA seq
743 aa
AA seq
DB search
MGALVPPQNVSTSAERICCIHFHPLGKYVGVLHSSSKNIDVYLIRNLQDSSKKRQRRLRR
RHEKEKRKTNDGTSKSGQKRGILDDPNSSSDEQGDGALLESSIMDPELMKASDEFEYVTT
VHASQKVRGFAFLRNKEKGELARVVCVLSSNALETHMLERKKGSENVSLVLSSKVATLDM
HGHPSGIRAVVLSSDDNLVCTISKSVAKIWNVTSRNVIQSVSPTILSSRKGKKLSCYGLC
AAFLPGNTHIIVGTREGHLLIIDISAGDVVDSEENAHDGAIWSLDIRRPNASDTSIALAT
GSADKTVKFWEIESAADDEGGIPIIVLSRTIKMTDDVVAVRYSNLIERSKRMVFVSTLDC
TVKVFFDDSLKLFLNLYGHKLPALAVDASDDDILLATSGADKTIKLWGLDFGDTHRTLHG
HEDSITDVRFVTRTHNFFSTSKDGTVRYWDGDRFQQILVLKGHCAEVNCLALSRTGAFVL
TGAMDRQVRVWERTNDIVFLDEERERALETAFEKVSSRDEGGTAGILDRRSDIDDDEGQH
DEPQSEAAVKQSIMSVSGGDRIMDGLEQADTELESFRKGQESWGKRSPNPMLLGLEPAQY
VLWILRSIKNSELEQSLLVLSLSHIERLFFYLTNLLRDGQGVELCSRVGIFLIKTHQNQL
LASRSLATPICEVRRLTRLRLSEARDMVGYNLAALRMIARVSSNGKKSFLPDDSQSPEDI
WAGLGLGSDVAAALKGRSRKRKD
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgggagctctggtaccgccccaaaacgtttcgacttctgctgagaggatttgctgtatc
cactttcacccattaggaaaatatgttggtgttttacacagcagctcaaaaaatattgat
gtttacctcattcgaaatctacaagacagcagtaagaaacgccaacgccgtctacgacgc
cgtcatgaaaaagaaaagagaaagactaacgatggaacgagtaagagcggacagaaaaga
ggcatcctcgacgatccaaactcttcttctgacgaacaaggcgacggtgctttgctggag
tccagcattatggaccctgaactcatgaaggcgtccgatgaatttgaatatgttacgaca
gtgcatgcaagtcagaaagtgcgaggttttgcatttctccgcaacaaagaaaaaggcgaa
ctggcccgtgtagtttgtgtgttgtcgagcaacgctcttgagacgcatatgctggaacga
aaaaaggggagcgaaaatgtaagcttagtactttccagcaaagttgccacgctagatatg
cacggtcatccatcaggaattcgtgctgttgtcctttcttccgatgacaacttggtctgc
actatctcgaaaagtgtcgcaaagatttggaatgtgacctcaaggaatgttattcaatct
gtttcaccgaccattttgtcgtcgaggaaagggaaaaaattgtcatgctatgggttatgt
gctgcgtttcttcctggcaatacgcatattatcgtcggaacgagggaaggccacttactc
attattgacatctctgctggcgatgtggttgattcggaagaaaacgcccacgatggtgcg
atatggagtcttgacattcgtcggccgaacgcttcggatacatccattgcgctggctact
ggctcggcagataagactgtaaagttctgggaaattgagagtgcagccgacgatgaaggg
ggcattcctataattgtactcagtcgcaccatcaagatgacagatgatgttgtcgcggta
agatactcaaatttgatagagcgttcaaagcgcatggtgtttgtgtcgacgctagactgt
accgtcaaagtcttttttgacgattcgctcaagttattcttgaatttatacggtcacaag
ctacctgcgttggctgtcgatgccagcgatgatgacatacttctggcaacttcgggtgca
gacaagaccatcaaactttggggcttagacttcggggacacccatcggacgcttcatggt
cacgaagactccattaccgacgtacgctttgtcacccgaactcacaacttctttagcacg
agcaaagatggaactgtcaggtattgggacggagatcggttccaacagattcttgttttg
aaaggacattgcgccgaggtcaactgtttggcgttgagcagaactggggcttttgtgttg
acaggagccatggatcgccaggtgcgtgtgtgggagcgtactaacgacattgtatttttg
gacgaagaacgtgaaagagcgcttgagacggcttttgagaaagttagtagtcgtgacgaa
ggaggtacagctggcattctcgatcgaaggagtgatatcgacgatgatgaaggacagcat
gatgagccgcaaagtgaggcagctgttaagcaaagcataatgagtgtatccggaggtgat
aggataatggatgggttagaacaggcagacactgaactcgaatccttcagaaaaggtcaa
gaatcttggggaaaacgttctcccaatccaatgcttctagggctcgaacctgcgcagtac
gttctatggatactacggtcgattaagaattctgaactcgaacagagtttgcttgtattg
tctctgagtcacattgaacgcttatttttctacttgacaaatttgcttcgagacggccaa
ggagttgaactttgctctcgagttggcatctttcttatcaaaacccatcaaaaccaactc
cttgcaagccgctctcttgcgacgcccatttgcgaggttcgacgtcttactcgtctgcga
ctgtcagaagcccgggatatggttgggtataatctggctgctttgagaatgattgccaga
gtatcatccaatggaaagaaatcattcttacctgacgacagtcaatcccccgaagatatt
tgggcaggacttgggcttggcagtgatgttgccgctgcactgaaaggccggtcaaggaag
agaaaggattga
DBGET
integrated database retrieval system