KEGG   Phaeodactylum tricornutum: PHATRDRAFT_18258
Entry
PHATRDRAFT_18258  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K14556  U3 small nucleolar RNA-associated protein 12
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PHATRDRAFT_18258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pti03009]
    PHATRDRAFT_18258
Ribosome biogenesis [BR:pti03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    PHATRDRAFT_18258
SSDB
Motif
Pfam: Beta-prop_WDR3_2nd WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Utp12 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_Gbeta Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st CFAP251_N NBCH_WD40 Beta-prop_TEP1_C DSE1_N Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_NOL10_N WD40_MABP1-WDR62_1st ASA1 Beta-prop_LRRK2 Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 7197481
NCBI-ProteinID: XP_002178040
JGI: 18258
UniProt: B7FSU3
LinkDB
Position
2:complement(959674..963459)
AA seq 743 aa
MGALVPPQNVSTSAERICCIHFHPLGKYVGVLHSSSKNIDVYLIRNLQDSSKKRQRRLRR
RHEKEKRKTNDGTSKSGQKRGILDDPNSSSDEQGDGALLESSIMDPELMKASDEFEYVTT
VHASQKVRGFAFLRNKEKGELARVVCVLSSNALETHMLERKKGSENVSLVLSSKVATLDM
HGHPSGIRAVVLSSDDNLVCTISKSVAKIWNVTSRNVIQSVSPTILSSRKGKKLSCYGLC
AAFLPGNTHIIVGTREGHLLIIDISAGDVVDSEENAHDGAIWSLDIRRPNASDTSIALAT
GSADKTVKFWEIESAADDEGGIPIIVLSRTIKMTDDVVAVRYSNLIERSKRMVFVSTLDC
TVKVFFDDSLKLFLNLYGHKLPALAVDASDDDILLATSGADKTIKLWGLDFGDTHRTLHG
HEDSITDVRFVTRTHNFFSTSKDGTVRYWDGDRFQQILVLKGHCAEVNCLALSRTGAFVL
TGAMDRQVRVWERTNDIVFLDEERERALETAFEKVSSRDEGGTAGILDRRSDIDDDEGQH
DEPQSEAAVKQSIMSVSGGDRIMDGLEQADTELESFRKGQESWGKRSPNPMLLGLEPAQY
VLWILRSIKNSELEQSLLVLSLSHIERLFFYLTNLLRDGQGVELCSRVGIFLIKTHQNQL
LASRSLATPICEVRRLTRLRLSEARDMVGYNLAALRMIARVSSNGKKSFLPDDSQSPEDI
WAGLGLGSDVAAALKGRSRKRKD
NT seq 2232 nt   +upstreamnt  +downstreamnt
atgggagctctggtaccgccccaaaacgtttcgacttctgctgagaggatttgctgtatc
cactttcacccattaggaaaatatgttggtgttttacacagcagctcaaaaaatattgat
gtttacctcattcgaaatctacaagacagcagtaagaaacgccaacgccgtctacgacgc
cgtcatgaaaaagaaaagagaaagactaacgatggaacgagtaagagcggacagaaaaga
ggcatcctcgacgatccaaactcttcttctgacgaacaaggcgacggtgctttgctggag
tccagcattatggaccctgaactcatgaaggcgtccgatgaatttgaatatgttacgaca
gtgcatgcaagtcagaaagtgcgaggttttgcatttctccgcaacaaagaaaaaggcgaa
ctggcccgtgtagtttgtgtgttgtcgagcaacgctcttgagacgcatatgctggaacga
aaaaaggggagcgaaaatgtaagcttagtactttccagcaaagttgccacgctagatatg
cacggtcatccatcaggaattcgtgctgttgtcctttcttccgatgacaacttggtctgc
actatctcgaaaagtgtcgcaaagatttggaatgtgacctcaaggaatgttattcaatct
gtttcaccgaccattttgtcgtcgaggaaagggaaaaaattgtcatgctatgggttatgt
gctgcgtttcttcctggcaatacgcatattatcgtcggaacgagggaaggccacttactc
attattgacatctctgctggcgatgtggttgattcggaagaaaacgcccacgatggtgcg
atatggagtcttgacattcgtcggccgaacgcttcggatacatccattgcgctggctact
ggctcggcagataagactgtaaagttctgggaaattgagagtgcagccgacgatgaaggg
ggcattcctataattgtactcagtcgcaccatcaagatgacagatgatgttgtcgcggta
agatactcaaatttgatagagcgttcaaagcgcatggtgtttgtgtcgacgctagactgt
accgtcaaagtcttttttgacgattcgctcaagttattcttgaatttatacggtcacaag
ctacctgcgttggctgtcgatgccagcgatgatgacatacttctggcaacttcgggtgca
gacaagaccatcaaactttggggcttagacttcggggacacccatcggacgcttcatggt
cacgaagactccattaccgacgtacgctttgtcacccgaactcacaacttctttagcacg
agcaaagatggaactgtcaggtattgggacggagatcggttccaacagattcttgttttg
aaaggacattgcgccgaggtcaactgtttggcgttgagcagaactggggcttttgtgttg
acaggagccatggatcgccaggtgcgtgtgtgggagcgtactaacgacattgtatttttg
gacgaagaacgtgaaagagcgcttgagacggcttttgagaaagttagtagtcgtgacgaa
ggaggtacagctggcattctcgatcgaaggagtgatatcgacgatgatgaaggacagcat
gatgagccgcaaagtgaggcagctgttaagcaaagcataatgagtgtatccggaggtgat
aggataatggatgggttagaacaggcagacactgaactcgaatccttcagaaaaggtcaa
gaatcttggggaaaacgttctcccaatccaatgcttctagggctcgaacctgcgcagtac
gttctatggatactacggtcgattaagaattctgaactcgaacagagtttgcttgtattg
tctctgagtcacattgaacgcttatttttctacttgacaaatttgcttcgagacggccaa
ggagttgaactttgctctcgagttggcatctttcttatcaaaacccatcaaaaccaactc
cttgcaagccgctctcttgcgacgcccatttgcgaggttcgacgtcttactcgtctgcga
ctgtcagaagcccgggatatggttgggtataatctggctgctttgagaatgattgccaga
gtatcatccaatggaaagaaatcattcttacctgacgacagtcaatcccccgaagatatt
tgggcaggacttgggcttggcagtgatgttgccgctgcactgaaaggccggtcaaggaag
agaaaggattga

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