Phaeodactylum tricornutum: PHATRDRAFT_19937
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Entry
PHATRDRAFT_19937 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_19937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_19937
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHATRDRAFT_19937
Spliceosome [BR:
pti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PHATRDRAFT_19937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
AAA_22
AAA_19
DEAD
nSTAND3
AAA_30
T2SSE
Cas3-like_C_2
TsaE
ABC_tran
AAA_7
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
7200572
NCBI-ProteinID:
XP_002179824
JGI:
19937
UniProt:
B7FXT9
LinkDB
All DBs
Position
7:complement(298040..>301515)
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AA seq
1012 aa
AA seq
DB search
MPSTNKTETIQWCSDALHDLLGFADTALASYLVSVAKKATQSSEIVQILVDGDVRDVTPE
RMERFAEQLLSHARPTPKQSHGGPASRQAKAIHSQTKTNADWVKAASSYQLIDVEISEEP
SNLNKPSDRRKGKKDRQDKRDSSLSEPLTPAERVELEREKDLKERDELVQRMMERDQTKT
KQKAKSEEKSDSLTLERLREESRRAYLKKREERELALLKQSLQDEEDLFRGAKLTEAEKK
RIQMGKQILSMVEERDGEEDKDDEFYRLPGDFHEKHSRAKQQEALLTSRYNEPKLEKSEQ
DLWEESQTQKAGAIGGRQKKAIESDGYELLFDDQIDFVMQETREGYDKHESLSEMRPATE
HEKILEGRTKLPVYAYREEFLAAVKEHQILILVGETGSGKTTQIPQFLNEVGYGELGKIG
CTQPRRVAAMSVAARVAQEMNVRLGHEVGYSIRFENCTSPKTILQYMTDGMLLREILTQP
DLASYSCMVIDEAHERTLHTDILFGLVKDIVRFRSDLKLIVSSATLDAEKFSKYFDDASI
FMIPGRMFPVDTYYTKAPEADYVDAAVVTVLQIHVSQPLNGDVLVFLTGQEEIETAAETL
SERSKNLGSRIPELIICPIYANLPSEQQAKIFEKTPSGARKVVLATNIAETSLTIDGICY
VIDTGFNKQKTYNARSGMESLVVTPISQAAANQRAGRAGRTQPGKCFRLFTAWSFQHELE
PNTVPEILRTNMGNVVLMLKSLGINDLLNFDFMDRPPADALIRALEQLYALGALNDRGEL
TKLGRRMAEFPLDPMLSKSVIVSEKYECTSEVLSTVAMLSLGASVFYRPKEKAVHADTAR
LNFARGGGGDHIALLRCYSEWAASDFSPSWCFENFVQVKNIKKARDIREQLAGLCDRVEI
DHTVSNSDDFDATLKTITAGFFYNIAKLGRTGEYQTAKQHKTVYIHPSSVMAKEEEPPPW
LVFFELTFTTKEFMRQVAPIKPSWLVEIAPHYYQETDIEDSKTKKMPRTRRN
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaccaacaaaaccgaaactattcagtggtgctcggatgccttgcacgatttg
ttgggctttgccgacacggcgttggcttcgtacctggtcagcgttgcgaagaaggcaaca
caatcgtcggaaatcgtccagatcctcgtggatggagatgtacgagacgtgacaccggaa
cgcatggaaagatttgctgagcaattgctctcgcacgctcgaccgacaccgaagcaaagc
cacggcggacctgcttctcgacaagcaaaggccattcacagtcaaacaaaaacgaacgcg
gactgggtcaaggcggcttccagctatcaactgattgatgtagagatcagcgaagaaccg
tctaatctgaataaaccaagcgacagacggaagggaaagaaagacagacaggataaaagg
gattcttccctttccgaacctcttactcctgcagagcgcgtggaactagaaagggaaaag
gatctgaaggaacgagacgagcttgtacagcgcatgatggaacgcgatcagacaaaaaca
aaacaaaaggcaaagtcagaagaaaaatctgattctttaacgttggagcgactccgcgag
gagagccgtcgtgcgtatctgaagaagcgagaagagcgtgagctagccctattgaaacag
tcgcttcaggatgaagaggatctttttagaggcgcaaaattaacggaagcagaaaaaaag
cgaattcagatggggaagcagatccttagcatggttgaggagagagacggtgaggaagac
aaggatgatgaattttatcggttacctggggactttcatgagaaacactcaagggctaaa
cagcaagaagcattgctgacgtcccgctataacgagcctaaactcgaaaaatcggaacag
gatctgtgggaagagtcgcaaacgcaaaaggctggtgctattggcgggcgccagaagaag
gcgattgaatcagacggttacgagttgttgttcgacgatcagatcgattttgttatgcag
gaaactagagaaggctatgacaaacacgagagtctgtcagagatgcgtccagcaactgag
catgaaaagattctggaagggcgtaccaaacttcctgtttacgcttatcgcgaagaattc
ctagctgcagtcaaagagcatcagattctcatcttagtgggagaaacgggctcgggcaaa
acgacacaaattcctcaatttctcaacgaagttggatatggtgagctggggaaaattggt
tgcacgcagcctcggcgcgtcgctgcaatgagtgtggcagctcgtgtcgcgcaagaaatg
aacgtcaggctcgggcacgaagttggctactccattcgattcgagaattgcacaagcccc
aagacgattctccagtacatgacggacggtatgcttctgagggaaattttgacccaacca
gatttggcgagctactcatgcatggtaatcgacgaagcacatgagcgcacgctacatacg
gatatactttttggtctcgtcaaggacattgtgcgtttcagaagtgatcttaaactcatc
gtcagtagtgcaacgcttgatgccgaaaaattctcgaagtattttgacgatgccagcatt
ttcatgattcccggtcgtatgtttccagtcgatacatattacacaaaagccccggaagct
gactatgttgacgcggcggttgtcaccgtgctacagatacatgtatcccagccgctcaac
ggagatgtgctagtatttttgaccggtcaagaggaaatcgagactgcggccgaaaccttg
tccgagcgttcgaaaaaccttggctctcgcatacctgagctaatcatttgtccgatttac
gccaaccttccctcagagcagcaagcgaaaatctttgaaaagactccaagcggtgctcgc
aaagtagttcttgctacaaatatcgcagagacaagccttacaattgacgggatctgttac
gtgatagatactgggttcaataaacaaaaaacatataatgccagatctggcatggaatct
ctggtcgtaactcccatttcacaagcagccgctaaccaacgagctggtcgagcagggcgg
acgcaaccaggcaagtgttttcggctctttacagcatggtctttccaacatgaacttgaa
ccaaacaccgtgccggagatattacggacgaacatgggaaacgttgttttaatgttgaag
agtctcggaatcaacgatcttttgaattttgacttcatggaccggcctcctgccgatgct
ttgataagagctcttgaacagctgtacgccctcggtgcgctcaatgatcggggagaattg
acaaaactcggtcgtcgaatggcagaatttcctttggatcctatgctaagtaaatctgta
attgtgtccgaaaagtatgaatgcacatccgaggtgctgtcgaccgtcgcgatgctttct
ctaggtgcatcggttttctatcggccaaaagaaaaggcagtacatgccgacacggcgcga
cttaattttgcccgcggtggtggaggtgaccatatcgctctgcttcgatgttactctgaa
tgggcagcatctgacttcagtccttcttggtgcttcgaaaattttgttcaagtcaagaac
attaaaaaagcccgtgacattcgggagcagctagcaggactttgtgatcgtgtagagatt
gatcatacagtttcgaattctgacgatttcgacgctactctgaaaacaattactgctggt
ttcttttacaacattgcgaaacttggtcgtactggagagtatcagacagcgaagcagcac
aagactgtgtatattcatcctagcagcgtaatggcaaaagaggaagagccgccaccgtgg
ctagtattttttgagcttacctttacaacaaaggaattcatgagacaggtagcccctatc
aagccatcgtggttggttgaaattgcaccgcactattatcaagaaactgatatcgaagat
tcgaagaccaaaaaaatgccgagaacgagacgcaattga
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