Phaeodactylum tricornutum: PHATRDRAFT_20188
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Entry
PHATRDRAFT_20188 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHATRDRAFT_20188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_20188
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
Pre-60S particles
GTPases
PHATRDRAFT_20188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_III
EF-G_D2
MMR_HSR1
DUF2015
Motif
Other DBs
NCBI-GeneID:
7200900
NCBI-ProteinID:
XP_002179982
JGI:
20188
UniProt:
B7FZP5
LinkDB
All DBs
Position
8:142282..145668
Genome browser
AA seq
693 aa
AA seq
DB search
MSATNRSSSSVFLPPSQTRLVTIAAHVDHGKTTLADNLIEANGLISERLAGTLRYLDSDP
EEQRRGITMRSSAIGLQHHVIHLYDSPGHTDFSREVSSAMSCCDTALLVVDAVEGMGPRT
HQVFREAYAQQLVPILVLNKIDRLCLDLRLTPTEAYLRLRNLLETVNAAASTLLTSSRHA
DHASGSNGDPSTEITTELETQWTFDPARNNVVFASALFGFGFTAQNLARALYQTKAIPSS
LKPPVFRSLVFADAKLKGDKVLKWKARDQTDDAPIFAIYGLQPLWDVLEGVATAAAAAGL
GSSQLTAITNAAQEEYSRIAEAVQNCSVAPNAPTVAHVYKFMAAERSQIRDPCLPTNLES
HDEDHTSLILGVARVLSGSLKTGKSYYAMGPKHLHTDSNIVPKRAIRLYLLMGSSFVLVD
EVPAGHLCGVYNLEDTQLKTITLSDSPHGMPLTAMEQGIRPLVKVNVEAQEASDTIALER
GLRKLALADAAVEVTATAKGERLLACLGEIHLEQSILDLRNVYCGREIKLRISDPIVDFG
ETTDWLMEGHLRLTLHSSMAGLGPLYSVLNKRRGKVLDDSMVDGADLLMITALIPQAEAF
GLAPELYSNTSGEVTAPELNFSHWDRLDVDPFWIPTSLEEREDFGELQMAGDMSTGLDNT
ALKYIRKVREQKGLTTDSARTVLNAEKQRTLKR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctacgaacagatcctcttcgtcggtgtttctgccgccgtcccaaacgcgcttg
gtcacgattgccgcgcacgtggatcacggcaaaacaaccttggcggacaatcttatcgag
gccaacgggcttatttcggaacgtctcgccgggactctccgctacctcgactcggatccg
gaagaacaacgccgtggcattactatgcgcagctccgcgattgggctccagcaccacgtg
attcatctctacgattctcccggacacacggatttttctcgcgaagtatcgtccgccatg
tcctgctgcgatacggccttgctcgtcgtggatgccgtcgagggtatgggaccccgtaca
catcaagtctttcgggaagcctacgcgcaacagctggttcccattctcgtgctcaataaa
atcgatcgattgtgtttggatctgcgcctcacacccaccgaggcgtatctgcgtttgcgg
aatctactcgaaacggtcaacgccgccgcttccaccttgttgaccagctcgcggcacgcg
gaccacgcgtcaggaagcaatggcgatccgtcaaccgagataaccacggaattggaaaca
cagtggacgtttgatccggcccgtaataacgtggtgtttgcgtccgccctgtttggattt
ggatttacggcacaaaatttggcgagagccttgtatcagaccaaggctattccatcgtcc
cttaaaccacccgtatttcgttccctggtttttgccgacgccaaactcaaaggtgataag
gtactgaagtggaaggcacgggaccagacagacgatgctcccatttttgccatctatggt
ttgcagccactgtgggatgttttggaaggcgttgcgacggcggccgcggcagcgggactc
ggatcgtcacaactaacggcaattacaaatgctgctcaggaggaatattctcgaattgcg
gaggcggttcaaaattgcagcgttgctccgaacgcccccaccgtagcgcatgtgtacaag
tttatggccgcggaacgttcccaaattcgggatccatgtttgcctacgaatctggagagt
catgatgaggaccacacaagcttgattctgggcgtagcaagggtgttgagtgggagcttg
aaaacgggaaagtcttactacgcaatgggcccaaagcatttgcacaccgactccaatatt
gtaccaaaacgagctatacggctgtacttactcatgggtagttcgtttgtactcgtggac
gaggtaccggctggacatttgtgtggggtctacaatttggaagacacgcagcttaaaaca
atcacgctatctgactcgccccacggcatgcctctgactgccatggaacagggtatccga
cccctcgtgaaggtcaacgtggaagcacaggaagcttctgataccattgccttagaacgc
ggattacgaaaactggccttggctgatgcggccgttgaagtcacagcgacggccaaagga
gaacggcttttggcttgtttaggagaaattcatttggaacaatctattctggatcttcgg
aatgtttattgcggtagagaaataaaattgcgcatttctgatcccattgtagactttggc
gaaaccaccgactggttaatggaaggccacttgagacttacgctccactcatccatggct
ggactcggtcctctatattcggtacttaacaagcgtcgcggcaaagtcctagatgattcc
atggttgatggtgctgacttgctcatgatcactgcgcttattcctcaagcggaagcattt
ggactcgcaccggaactttacagcaataccagtggggaggtcaccgcgccagaactaaat
tttagccactgggatcgacttgacgtggacccgttttggatcccaacaagtttagaggaa
cgggaggattttggcgagttacagatggctggagatatgtctactggtctggacaatacc
gctctcaaatatattcgcaaagttcgagaacaaaaaggcctgactactgactcggcccgt
acagttttaaatgccgaaaagcagcgaacacttaagcgatag
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