KEGG   Phaeodactylum tricornutum: PHATRDRAFT_21983
Entry
PHATRDRAFT_21983  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATRDRAFT_21983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pti03041]
    PHATRDRAFT_21983
Spliceosome [BR:pti03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PHATRDRAFT_21983
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EIPR1 PRP4 Beta-prop_DCAF4 Beta-prop_TEP1_C ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_SCAP NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_NWD2_C PROPPIN Obc1_cap Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 7203088
NCBI-ProteinID: XP_002182364
JGI: 21983
UniProt: B7G573
LinkDB
Position
15:complement(300399..302134)
AA seq 484 aa
MQGGQQHNAAQTEVLSLTAASRAQQEVHQAMLLDLEAKKIAASLDVPTLPEQVRAALREM
GQPVRLFGENLADVRQRLREAMAHQKVSLDAASLFKEEDLTGQRGANERYEEEVTKYTRA
EQELIEARQAIANFSLKRAGARLERERRLRLQANRRKRKIDEKPGTSTEVDVLDESCHKM
YQSIQMMALQGSQYGDSRVVSCISAQTLDGIPVVATGGWTGSVQLWDGSSSALEILGGKT
MCHEDRIMGLDTMKVNEDLAIMATTSIDLTAKLYRVQSAHTQAVLHGHQSRLCRAAFHPM
QRHVATTSFDHTWRLWDIETSQNILLQDGHWKECYGVGFHPDGSLCATTDFGGIVQVWDL
RTGKSIKHFLGHAKRVLNAIFHPNGFQLATAGDDGTIKIWDLRRRKLAASLPAHSNVVTK
LQFDASGEYLASSSYDGTARLWGCRDWKMLRQLQAHEGKLSGIEILGSNSILTCGFDKTL
KLWQ
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgcaaggaggtcaacaacacaatgctgctcaaacggaggtgctcagtttgacggccgcg
agtcgagcccagcaagaagtccaccaagccatgctactggatctggaggctaagaaaatt
gcggcttccttggatgtgcccacgctgccggaacaagtgcgcgccgctttgcgagaaatg
ggacagcccgtccgtttgttcggagaaaatttggccgatgtgcgccagcgcttgcgcgaa
gccatggcgcatcaaaaagtctcactggatgcggcgtcgctctttaaggaagaagatctg
actgggcaacgcggagcaaatgaaagatacgaagaagaggtgacaaaatacacccgtgcg
gagcaggagttgattgaggctcgtcaagcgattgccaatttttcattgaaacgggcgggg
gcgcgactggaacgggaacgccgactccgcttgcaagcgaaccggcgcaagcgtaaaatt
gacgaaaaacccggcaccagtacggaagtggacgtgctcgatgaatcctgtcacaaaatg
taccaatccattcagatgatggccctgcagggttctcagtatggtgatagccgtgttgtg
agctgcatcagcgcacaaactttggatgggattcccgtcgttgcaactgggggttggact
ggaagcgttcagttatgggatggaagttcctccgcgcttgagatcttagggggcaagacc
atgtgccacgaagaccggattatgggcttggatacaatgaaagtaaacgaagacctggca
attatggcaacaacgtccatcgatttgactgctaagttgtaccgtgtgcagagcgctcac
actcaagcggtcttacacggtcatcaatcccgattatgccgagcagcttttcatccgatg
caacgacatgtcgcaaccaccagttttgatcatacctggcgtttatgggatattgaaact
agccagaatattctgctccaagatggtcattggaaggagtgttacggtgttggtttccat
ccagacggcagtctatgtgccacgactgatttcggcggaatcgtacaggtctgggatttg
aggactggcaagtctattaaacactttctggggcatgcgaagcgtgtgctaaacgctatt
tttcacccgaacggctttcaattggccacggccggtgacgacggtacgatcaagatttgg
gatctgcgaaggcggaaactggctgcatccttgccagcgcattccaacgtggtaaccaaa
ctacagtttgatgcgtccggtgaatatctggcgtcgtcttcctatgatgggacggcacgg
ttgtggggctgccgtgattggaaaatgttgcgccagctgcaggcccatgaaggcaagcta
tcgggaatagaaattctaggcagcaactccattctaacctgtggatttgacaagacgctc
aaactgtggcagtaa

DBGET integrated database retrieval system