Phaeodactylum tricornutum: PHATRDRAFT_21983
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Entry
PHATRDRAFT_21983 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_21983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_21983
Spliceosome [BR:
pti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
PHATRDRAFT_21983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
PRP4
Beta-prop_DCAF4
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_Vps41
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
PROPPIN
Beta-prop_IFT140_2nd
Obc1_cap
Motif
Other DBs
NCBI-GeneID:
7203088
NCBI-ProteinID:
XP_002182364
JGI:
21983
UniProt:
B7G573
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Position
15:complement(300399..302134)
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AA seq
484 aa
AA seq
DB search
MQGGQQHNAAQTEVLSLTAASRAQQEVHQAMLLDLEAKKIAASLDVPTLPEQVRAALREM
GQPVRLFGENLADVRQRLREAMAHQKVSLDAASLFKEEDLTGQRGANERYEEEVTKYTRA
EQELIEARQAIANFSLKRAGARLERERRLRLQANRRKRKIDEKPGTSTEVDVLDESCHKM
YQSIQMMALQGSQYGDSRVVSCISAQTLDGIPVVATGGWTGSVQLWDGSSSALEILGGKT
MCHEDRIMGLDTMKVNEDLAIMATTSIDLTAKLYRVQSAHTQAVLHGHQSRLCRAAFHPM
QRHVATTSFDHTWRLWDIETSQNILLQDGHWKECYGVGFHPDGSLCATTDFGGIVQVWDL
RTGKSIKHFLGHAKRVLNAIFHPNGFQLATAGDDGTIKIWDLRRRKLAASLPAHSNVVTK
LQFDASGEYLASSSYDGTARLWGCRDWKMLRQLQAHEGKLSGIEILGSNSILTCGFDKTL
KLWQ
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggaggtcaacaacacaatgctgctcaaacggaggtgctcagtttgacggccgcg
agtcgagcccagcaagaagtccaccaagccatgctactggatctggaggctaagaaaatt
gcggcttccttggatgtgcccacgctgccggaacaagtgcgcgccgctttgcgagaaatg
ggacagcccgtccgtttgttcggagaaaatttggccgatgtgcgccagcgcttgcgcgaa
gccatggcgcatcaaaaagtctcactggatgcggcgtcgctctttaaggaagaagatctg
actgggcaacgcggagcaaatgaaagatacgaagaagaggtgacaaaatacacccgtgcg
gagcaggagttgattgaggctcgtcaagcgattgccaatttttcattgaaacgggcgggg
gcgcgactggaacgggaacgccgactccgcttgcaagcgaaccggcgcaagcgtaaaatt
gacgaaaaacccggcaccagtacggaagtggacgtgctcgatgaatcctgtcacaaaatg
taccaatccattcagatgatggccctgcagggttctcagtatggtgatagccgtgttgtg
agctgcatcagcgcacaaactttggatgggattcccgtcgttgcaactgggggttggact
ggaagcgttcagttatgggatggaagttcctccgcgcttgagatcttagggggcaagacc
atgtgccacgaagaccggattatgggcttggatacaatgaaagtaaacgaagacctggca
attatggcaacaacgtccatcgatttgactgctaagttgtaccgtgtgcagagcgctcac
actcaagcggtcttacacggtcatcaatcccgattatgccgagcagcttttcatccgatg
caacgacatgtcgcaaccaccagttttgatcatacctggcgtttatgggatattgaaact
agccagaatattctgctccaagatggtcattggaaggagtgttacggtgttggtttccat
ccagacggcagtctatgtgccacgactgatttcggcggaatcgtacaggtctgggatttg
aggactggcaagtctattaaacactttctggggcatgcgaagcgtgtgctaaacgctatt
tttcacccgaacggctttcaattggccacggccggtgacgacggtacgatcaagatttgg
gatctgcgaaggcggaaactggctgcatccttgccagcgcattccaacgtggtaaccaaa
ctacagtttgatgcgtccggtgaatatctggcgtcgtcttcctatgatgggacggcacgg
ttgtggggctgccgtgattggaaaatgttgcgccagctgcaggcccatgaaggcaagcta
tcgggaatagaaattctaggcagcaactccattctaacctgtggatttgacaagacgctc
aaactgtggcagtaa
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