KEGG   Phaeodactylum tricornutum: PHATRDRAFT_21983
Entry
PHATRDRAFT_21983  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATRDRAFT_21983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pti03041]
    PHATRDRAFT_21983
Spliceosome [BR:pti03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PHATRDRAFT_21983
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_WDR90_POC16_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EIPR1 PRP4 Beta-prop_DCAF4 Beta-prop_TEP1_C ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_Vps41 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_NWD2_C PROPPIN Beta-prop_IFT140_2nd Obc1_cap
Other DBs
NCBI-GeneID: 7203088
NCBI-ProteinID: XP_002182364
JGI: 21983
UniProt: B7G573
LinkDB
Position
15:complement(300399..302134)
AA seq 484 aa
MQGGQQHNAAQTEVLSLTAASRAQQEVHQAMLLDLEAKKIAASLDVPTLPEQVRAALREM
GQPVRLFGENLADVRQRLREAMAHQKVSLDAASLFKEEDLTGQRGANERYEEEVTKYTRA
EQELIEARQAIANFSLKRAGARLERERRLRLQANRRKRKIDEKPGTSTEVDVLDESCHKM
YQSIQMMALQGSQYGDSRVVSCISAQTLDGIPVVATGGWTGSVQLWDGSSSALEILGGKT
MCHEDRIMGLDTMKVNEDLAIMATTSIDLTAKLYRVQSAHTQAVLHGHQSRLCRAAFHPM
QRHVATTSFDHTWRLWDIETSQNILLQDGHWKECYGVGFHPDGSLCATTDFGGIVQVWDL
RTGKSIKHFLGHAKRVLNAIFHPNGFQLATAGDDGTIKIWDLRRRKLAASLPAHSNVVTK
LQFDASGEYLASSSYDGTARLWGCRDWKMLRQLQAHEGKLSGIEILGSNSILTCGFDKTL
KLWQ
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgcaaggaggtcaacaacacaatgctgctcaaacggaggtgctcagtttgacggccgcg
agtcgagcccagcaagaagtccaccaagccatgctactggatctggaggctaagaaaatt
gcggcttccttggatgtgcccacgctgccggaacaagtgcgcgccgctttgcgagaaatg
ggacagcccgtccgtttgttcggagaaaatttggccgatgtgcgccagcgcttgcgcgaa
gccatggcgcatcaaaaagtctcactggatgcggcgtcgctctttaaggaagaagatctg
actgggcaacgcggagcaaatgaaagatacgaagaagaggtgacaaaatacacccgtgcg
gagcaggagttgattgaggctcgtcaagcgattgccaatttttcattgaaacgggcgggg
gcgcgactggaacgggaacgccgactccgcttgcaagcgaaccggcgcaagcgtaaaatt
gacgaaaaacccggcaccagtacggaagtggacgtgctcgatgaatcctgtcacaaaatg
taccaatccattcagatgatggccctgcagggttctcagtatggtgatagccgtgttgtg
agctgcatcagcgcacaaactttggatgggattcccgtcgttgcaactgggggttggact
ggaagcgttcagttatgggatggaagttcctccgcgcttgagatcttagggggcaagacc
atgtgccacgaagaccggattatgggcttggatacaatgaaagtaaacgaagacctggca
attatggcaacaacgtccatcgatttgactgctaagttgtaccgtgtgcagagcgctcac
actcaagcggtcttacacggtcatcaatcccgattatgccgagcagcttttcatccgatg
caacgacatgtcgcaaccaccagttttgatcatacctggcgtttatgggatattgaaact
agccagaatattctgctccaagatggtcattggaaggagtgttacggtgttggtttccat
ccagacggcagtctatgtgccacgactgatttcggcggaatcgtacaggtctgggatttg
aggactggcaagtctattaaacactttctggggcatgcgaagcgtgtgctaaacgctatt
tttcacccgaacggctttcaattggccacggccggtgacgacggtacgatcaagatttgg
gatctgcgaaggcggaaactggctgcatccttgccagcgcattccaacgtggtaaccaaa
ctacagtttgatgcgtccggtgaatatctggcgtcgtcttcctatgatgggacggcacgg
ttgtggggctgccgtgattggaaaatgttgcgccagctgcaggcccatgaaggcaagcta
tcgggaatagaaattctaggcagcaactccattctaacctgtggatttgacaagacgctc
aaactgtggcagtaa

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