Phaeodactylum tricornutum: PHATRDRAFT_22868
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Entry
PHATRDRAFT_22868 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14855
ribosome assembly protein 4
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_22868
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
PHATRDRAFT_22868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR75_2nd
eIF2A
RMC1_N
NLE
Beta-prop_Nup120_160
Ge1_WD40
WD40_like
Beta-prop_DCAF4
WD40_RFWD3
VPS8_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
7195357
NCBI-ProteinID:
XP_002183669
JGI:
22868
UniProt:
B7G8X7
LinkDB
All DBs
Position
20:complement(79534..81204)
Genome browser
AA seq
551 aa
AA seq
DB search
MTDRASTATVAAPNASASTAGGIAWAGSLVGVNNPNNLGYRYSTPSKRYRTTLDDGDDAS
RDVPTNIQVQFRNRQGEDLAQTLDLPTQSTIDDLTALVHSLLENSDSHDEQQRQKQGAGK
IPYSFYATILKNGVQDDVEITHTLSDLLQQHAISTEDVLQLTYQPLAVFRVRPVTRCTDT
LPGHTEAVLHVQYAPDGQMLASGGGDTTVRFWDVHTSTPKYTCKQHKNHVLCVAWAPNGK
RFVSADKNGVWIVWDPTKGEAVGKAVKAHRQWITSLAWEPMHLNAACDRLATSSKDGTIK
IWNVRTQAQNLTLSGHTDSVESIKWSGDGFLYSASRDRTIKVWNVDRGILVRTLTGHGHR
INTLALSSDYVLRTGPFDHRGTKFASEEAAQQAAQEKYEAFRAQGPERLVSGSDDFTLFL
WHPQESKHAIKRLTGHQQAVNHIAFSPDGRYFASASFDKKVKIWNGFSGDFLTTLTGHVG
AVYQVAWSSDSRYLVSASKDSTAKLWEMPSGKRARETLPGHADEVYALDWSPNGASVATG
SKDRTIKIWKH
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccgagcatcaacagcaactgtcgccgcaccgaacgctagtgctagtaccgct
ggtggcattgcgtgggcgggaagtctagtaggcgtcaacaaccccaacaatctcgggtac
cgctattcgacgccttccaaacggtaccgtaccacgctcgacgacggagacgatgcatcc
cgagatgttccgaccaacatccaagttcagtttcgtaatcgtcagggggaagacctcgcg
cagacgctggatttaccaacccagtcgacgatcgacgacttgaccgcgcttgtgcattcg
ctcctcgagaacagcgatagtcacgatgagcagcagcgacaaaagcaaggagccggaaag
atcccctacagcttttacgctacaatcttgaagaatggtgtgcaagatgatgtcgaaatc
acgcatacactctcggacctactccaacaacacgctatcagtaccgaagacgtcttgcag
ctcacctatcaaccgctggccgtctttcgggtccgtcccgtcacgcggtgtacagatact
ctgccaggacatacggaagcagttttgcacgtacagtacgccccggatggacaaatgcta
gcgtctggtgggggtgatactacggtacgcttttgggatgtgcatacatccacacccaag
tatacttgtaaacagcacaagaatcacgtcctttgtgttgcctgggctcccaacgggaaa
cgcttcgtatcggctgataaaaacggagtatggattgtttgggatcccactaaaggggaa
gccgtagggaaagcggtcaaggcacaccgtcaatggataacgtctttggcctgggaaccg
atgcacttgaacgccgcctgcgatcgactcgccacaagtagcaaggacggcaccatcaaa
atatggaatgtacggacgcaggctcaaaatctgaccttatccggtcataccgattccgtc
gaatcgatcaaatggagtggggacggatttttgtatagtgctagtcgggatcgtaccatt
aaagtatggaacgtcgatcgtggtattttagtgcgcaccctcaccgggcacggtcatcgc
atcaacaccctcgcacttagcagtgactacgtgttacgtaccggaccattcgatcaccgg
gggacgaaattcgcctcggaggaagcagctcaacaagccgcgcaagaaaagtacgaagcc
tttcgtgcccaaggccccgaacggttggtgtctgggtcggatgacttcaccctctttctc
tggcatcctcaggagagtaaacacgctatcaaacgactgaccgggcaccaacaagccgtg
aatcacattgcgtttagtccggatgggcgatatttcgccagcgcgagtttcgacaaaaag
gtcaaaatttggaatggtttctcgggggattttctcaccaccttgacgggtcatgtaggg
gctgtgtaccaggtagcttggagctctgactcacgatacttggtgagcgctagcaaagac
tccacggcgaaactgtgggaaatgcccagtggcaaacgggctcgtgagacattgccgggt
cacgccgacgaagtttacgctctagattggagccccaatggtgctagtgtcgcaacaggc
tcgaaagaccgtaccattaaaatttggaagcactga
DBGET
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