Phaeodactylum tricornutum: PHATRDRAFT_23838
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Entry
PHATRDRAFT_23838 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14572
midasin
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHATRDRAFT_23838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_23838
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
PHATRDRAFT_23838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_5
AAA_lid_7
AAA
AAA_7
AAA_16
AAA_3
AAA_22
AAA_lid_5
Sigma54_activat
bpMoxR
nSTAND3
AAA_18
TsaE
AAA_30
ABC_tran
AAA_14
AAA_6
Dynein_heavy
Rad17
AAA_25
AAA_29
AAA_28
AAA_23
NACHT
AAA_33
Sigma54_activ_2
SRP54
RuvB_N
PduV-EutP
AAA_2
MDN1_4th
ORC-CDC6-like
IstB_IS21
AAA_15
Motif
Other DBs
NCBI-GeneID:
7198891
NCBI-ProteinID:
XP_002185018
JGI:
23838
UniProt:
B7GDA1
LinkDB
All DBs
Position
27:340651..347029
Genome browser
AA seq
1879 aa
AA seq
DB search
MFAFDEHTAAHHDDQLLEIHVDEETDTKTLVGSYTTTDVPGEFEWRPGALTRAIRSGKWV
LLEDLDSIPIEIQASLVQLLKSRLLPLGNGKVERCHPNFRLFGTLTILPDVIHPGSVGGK
RILSPTMWRHIRIEPLPLSELKEIAVSMHKEVPGFVVDCVLKVFTALDQSGRTTAIEDDF
MDGLQLLTRAIIGRNPSVRDLFKVLTLCLAETYDIFVAACPDRNFKEECLRSIFAPTWGV
SADLALSYIDRRRPEPVVYPAYTEVGRARIPIPELYIRPNTDKETFAQTSYALRLMESIG
VCIAENEPTLLVGETGCGKTTILQHLARLSGRDLVVQNLSLQTDSTDLLGGFRPLEIQQV
ARSVYQNFVDLFTSSFSRKQNADFLAFTSDAMKRGNWKRLSQCFRKAAKLGIDKVKERSW
DSESSSVAASWRRFEKSTGRFEQQRLACNSGLAFVFAEGALIEAITRGKWVLLDEINLAS
SETLQRLCGLLDDPTSSITLTERGDGEPVERHPDFRLFAAMNPATDSGKKDLHASIRSRF
TELYVDELLDPLELRVVAERYICAVLPVTDTPPEHTETVVKAVDVYLECRSLAERVLVDG
SGQKPRYTLRTLSRALTASQIYVLQQKLPLQRALYEGFELAFQGPLSQTSLKPFCDLLTQ
AFASGLKKEEMDHPGRRPGGTAAVDRFALIKPFWIEKGPLESIDWSELNSNARSKFVLTR
STTNNLRRLARAVASGPWPILLEGPTSAGKTSLVEYLAARCGHHVIRINNHEHTDVQEYT
GSFAADSSGRLAFQDGLLALNRLLDDNRELYLPETNETVRPKHGFRLFATQNPSGVYGGR
KPLSRAFRNRFTELHLDDIPSSEMITILEKRSGCPPQHAKILVSIMDALRLKRSKSGVFL
GKNSFITPRDLLRWAERHATGKIELAHEGFMLLGERLRTREEKDCVREEIEKHLNVKIDL
ETLYFSESSEARSVLHPTIAPTRSLLRLVTLVLRCVRQREPVLLVGDTGCGKTTAVQLLS
CVLESELHTINCHATTETSDLLGGLRPVRDLARAYNALFEWSDGPLVKAVKAGDMILLDE
ISLAEDAVLERLNSVLEPSRTLVLAEKGSADDVESRVLIAHECFQLFATMNPGGDFGKRE
LSPALRSRFTEIWVPAVTDSADIDFVLERSLAQSAFEEGTRNDVKRKMIEYFNWFNEHLC
TDPSRPYAELALSLRDILTWAAFITACTQAGDDLDIWGIYYHGACLMHLDGLGLGTALAS
HDSASAKNKAIEFLMEHVPVDKRSTLGVMTNGFNVLDAKFGCNTFRIPVGQDHVAEADFN
LEAPTTSVNIFRILRAMQLSKPVLLEGSPGVGKTTLVAALAAASGHKLVRINLSDQTDIS
DLFGSDLPVPEKDASGNNSASFSWCDGVLLSAIKKGDWVLLDELNLASQAVLEGLNSCLD
HRASVYIPELGSSFRCPASFRIFAAQNPLAQGGGRKGLPKSFLNRFTKVFVDSLTDDDLR
VILTAKFPSLDEKLIDRVIAFNSRINCDVVQDRLYGQSGAPWEFNLRDVFRWCELLRFDL
FGQISISLPLVLARDLYFQRFRAQHDREIAKERYLSIFGSVDQKDPRCKLATTPLEVLVG
SVRLARLRGPDITRGPYVVESPLSLIHFQALEAVARCISKNWPCLLVGPAVVGKSSTIGC
LAELTGRKLVEICLSPSSDVSELVGCFEQVDGLEDYRVAFASICRVAEEYLLLGGSETEK
LRSRVDLNPIVWDDLAASRDLLLNYNGKMSTIGGHFVWKDGILIEAMEKGYWLHLKHVNL
CPASVLDRLNSVMEPNGSLLLAECSSAGEDGGTRHRQVHCHPDFRIFLSMNPEYGEVSRA
MRNRCVEIALMDHPALAYE
NT seq
5637 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcgtttgacgaacacaccgcagctcaccatgacgatcagctgctagagattcat
gtcgatgaagaaacggatacaaaaactttagttggatcatacactacgaccgacgttccc
ggcgagtttgagtggagaccaggcgccttgacgagagcgattcgatctggtaaatgggta
ctgttggaggacttggattctattcccattgagatccaggcttcgttagtgcagttgtta
aaaagtagactgttgccactagggaacggaaaagtcgagcgatgtcacccaaactttcgt
cttttcggaacgttgactattctgcccgatgtgattcatccaggatcagtcggtggcaaa
cgaatactgagccccacgatgtggagacatatacgaatagaacctctgcctctttcggag
ctgaaagaaatcgctgtttcgatgcacaaagaggtccccggcttcgttgttgactgtgtt
ttgaaagtctttactgccctcgatcaaagtggtcgaacaaccgcaatagaagacgatttt
atggacggcctccaactcttgacacgggcaataattggaagaaatccttcagttcgggat
ctttttaaagttctaaccctttgcttggccgaaacgtatgatatttttgtcgcagcttgc
cctgatcggaattttaaagaagaatgtctcagaagtatttttgcaccaacttggggggtg
tcggctgacttggctctatcttacattgatagaaggcggccggaacctgtagtttaccca
gcgtacactgaagttggtagagcaagaatacctattcctgagctttatattcggccgaac
actgacaaagaaacgtttgctcaaacaagctatgctcttcgcttgatggagtcgatcgga
gtctgtatcgcggaaaatgagccaactcttttggtcggtgaaaccggctgtgggaagaca
acaatcctacagcatctcgcgagactttctggaagagatcttgttgtacaaaatctctct
ttgcaaaccgattcaacagatcttctcggtggatttcgaccgctggagatacagcaggtg
gctcgaagtgtataccagaattttgtagaccttttcacgtcttctttctctagaaagcag
aacgctgatttcctggcatttacctctgatgcaatgaaaagagggaactggaaaagattg
tctcaatgcttcagaaaagcagccaagcttggaatagataaggtcaaagaacgaagctgg
gattccgaatcgtcttcggtggcagcttcctggagacgttttgagaagagcactgggcgt
ttcgagcagcaacgacttgcttgcaattcagggttggcctttgtcttcgcggaaggtgcg
ctaatagaggctattacaagagggaagtgggtattgttggacgagatcaacttggccagt
tcggaaacgcttcaaagattgtgcgggctgcttgatgatccgaccagcagtatcactttg
accgaaagaggtgatggtgaacccgtcgaacggcaccctgactttcggttatttgcagca
atgaacccagcaaccgattcaggaaagaaagatctgcacgctagtatccggtctcgattt
acagagttgtacgtagacgaattgctcgatccgctggagctaagggtggttgccgaacgc
tacatttgtgcagttcttccggtgactgacacacctcctgaacacacggagactgtggtc
aaggccgttgatgtatatctcgaatgccgttcactcgcggaacgtgtcttggtcgacggc
agtggtcaaaaacctagatacactcttcgcactctatcaagagccttgactgcatcccaa
atctacgttcttcagcaaaagctcccactccagcgagcactttatgaaggctttgaactt
gcattccagggcccgctaagtcagacttcactgaaacctttttgtgatcttctcacccaa
gcatttgcttccgggttgaaaaaggaagagatggatcatcccggtcgtcgaccaggagga
accgctgcagtagatcgcttcgcactaattaaacctttttggattgagaaaggtcccctg
gagtcgatagattggtcggagctcaacagtaatgccaggtcaaagtttgttttgacacgg
agcaccactaacaatttacgtcgactcgcccgggcagtagcatcagggccttggccgatt
cttttggaagggcccactagcgccgggaagacatccttggtggaatacttagcggcacgt
tgtggtcatcacgttattcgtattaacaatcacgaacacaccgacgtgcaggagtatacg
gggagctttgccgccgactcgagtggtcgtcttgcttttcaagacggcttactcgccttg
aatcgtcttttggatgacaatagagagctttatctccctgaaaccaacgagactgtccgt
cctaaacatggattcaggctttttgcgacacaaaacccaagcggcgtatatggaggcaga
aaaccgctttctagggcctttcgaaatcgattcactgaacttcacttggacgatattcct
agtagcgaaatgattaccattctagagaaacggtccggatgtccacctcaacacgccaag
attttagtctcaatcatggatgctcttcgactgaagcgtagtaaaagtggagtgttcttg
ggaaagaacagcttcattactccacgggacctgttgaggtgggcagagcgacatgcaacc
gggaagattgaactagcccacgaaggtttcatgcttttgggagagcggttgcggacaagg
gaagaaaaggattgtgtccgagaagaaattgagaaacatctaaacgtaaaaatcgacctg
gagacactctacttcagtgagtcctcggaagcgagatcagttctccaccctacgatcgcc
ccgacgaggtctttgctgaggctagtcacgttggtgctccgctgtgtcaggcaacgtgaa
ccagttcttctcgttggagatacgggatgcggaaaaacaacagcggttcagcttctcagt
tgtgtattggagtccgaacttcataccatcaattgtcacgccacaaccgaaacctctgac
cttttaggtgggttgcggcctgttagagatctggctcgggcatacaatgctttgtttgaa
tggtccgatggtccgcttgtgaaagcggtcaaggctggagatatgatcctgctcgatgag
ataagtcttgccgaagatgcagttttggagagactgaattcggtgttggaaccatcgcgc
accctcgttctggcggagaaaggctcagcagacgacgttgagagtcgagttctcatcgcg
cacgaatgctttcagcttttcgcgaccatgaatcctgggggggattttggaaagcgtgag
ctcagcccggcacttcgaagtagattcacagaaatttgggtacctgctgttacggatagt
gccgatattgattttgtcctagagcgctccctagcacaaagtgctttcgaggaagggaca
cgaaatgacgtaaagcggaaaatgatagaatacttcaactggttcaatgaacacctctgt
accgatccttcgcgtccctatgccgaactggcgctttctctccgtgacatcttgacgtgg
gcagcttttattacagcttgcacgcaggctggcgacgaccttgacatatggggaatatac
taccacggcgcttgtcttatgcatttggatgggctgggactcggaactgcacttgcctcg
cacgattccgcatcggccaaaaataaagccattgaattcttgatggaacatgttccagta
gataaaaggtcaacgcttggtgtgatgacgaatggcttcaatgttctggatgcaaaattt
ggttgcaatactttccgtattccggtcggtcaagatcatgttgcggaagctgacttcaac
ttggaggctccgactacatctgtaaatattttccgaattctccgggcaatgcaactttca
aagccagtactgctcgaaggatccccgggggtgggaaagacgacgcttgtggctgcgctg
gcagcagcttccgggcataagcttgtgagaatcaacctttccgaccaaaccgacatttcc
gatttgttcggcagcgatctccctgttccggaaaaggatgcgtccgggaataactcagcc
tcctttagttggtgtgacggcgttctactgtccgctatcaaaaagggagactgggtgcta
ttagatgaattaaacctagcgtctcaggcggtgctggaaggtctgaacagctgtctcgac
catagagcaagtgtttacattccggaactaggtagttctttcagatgtcctgcgtccttc
cgaatttttgccgcacagaacccgttggcacaaggtggagggaggaaaggccttcctaag
tcgtttttgaatcggttcaccaaggtttttgttgattctttaacagacgacgatcttcgc
gttattttgacagcaaaatttccatcattggatgaaaagctcatcgaccgtgtgattgca
tttaacagtcggataaactgtgatgttgttcaagatcgcctgtatggtcagtccggtgca
ccgtgggagttcaatttgagagacgtttttcgatggtgtgagctgctacgatttgatctt
ttcgggcaaatatcaatttcccttcctctggtgcttgcccgagacctgtattttcaacgt
ttcagagcacaacatgaccgggaaattgcgaaagaacgttatctgtcaatcttcggatcc
gtggatcagaaggaccccagatgtaaactagcaacgactccgctcgaagtccttgtgggt
agtgtcagattagcacggttgcgaggtccggatatcacacgcggtccctatgtcgtagag
agtccgctttcgctcattcactttcaagcactcgaagcggtagctcgatgcatttcaaaa
aattggccttgcctacttgtagggccggcggtagtggggaagagctcgacaattggttgc
ctcgccgaattaacagggcgaaagctagtcgagatatgtctgtctccatcctctgacgtt
tctgagcttgtggggtgctttgagcaagttgatggacttgaggactacagggtagcgttc
gcgtctatctgccgtgtggctgaggaatatctgctgcttggcggatcggagactgaaaaa
ctcagatctagagtcgatctgaaccccatcgtatgggatgatctggcggcttctcgcgat
cttttgctcaattacaatggaaaaatgtcaacgataggcggtcactttgtttggaaagac
ggtattcttatcgaagcgatggaaaagggttactggcttcatttaaagcatgtcaacctt
tgcccagcttcggtgcttgatcgtttgaattctgtgatggaaccaaatggaagtttgttg
ttggcagagtgcagttcagcgggggaggacggaggaacaaggcatcgtcaagtccattgc
caccctgactttcggatctttctctctatgaatcctgaatatggggaggtttcaagggcg
atgcggaacagatgcgtggagatagcgttgatggaccacccggctctggcatatgag
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