Phaeodactylum tricornutum: PHATRDRAFT_23865
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Entry
PHATRDRAFT_23865 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_23865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_23865
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_23865
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHATRDRAFT_23865
Spliceosome [BR:
pti03041
]
Complex A
U2 snRNP components
U2 related factors
PHATRDRAFT_23865
Complex B
PHATRDRAFT_23865
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PHATRDRAFT_23865
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
90S particles
Helicases
PHATRDRAFT_23865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
FtsK_SpoIIIE
ATPase
PhoH
SLFN-g3_helicase
AAA_30
TsaE
Motif
Other DBs
NCBI-GeneID:
7199012
NCBI-ProteinID:
XP_002185197
JGI:
23865
UniProt:
B7GDE2
LinkDB
All DBs
Position
28:complement(60086..62360)
Genome browser
AA seq
720 aa
AA seq
DB search
MMSRKQRIDLGESSREASTNKRSKCETPNNINPWTGAPYSARYLSILETRQTLPVYLFRD
NLVEAVKNNQIVVVEGQTGSGKTTQIPQFILEAGFVTPGETSIACTQPRRVAATSIAQRV
AEEMDVELGQEVGYTIRFEDVSDPVKTVLKYVTDGMLLREAMSDPLLKRYSCIVLDEAHE
RTLSTDVLMGLLMEVLPKRIPGSKYGELKVVIMSATLDAEKFQEYFHGAPLMKVPGRTHP
VEVFYTSKPEANYVEAAVRTTMHIHECEGPGDILVFLTGEQEIEQACEEMREKAGAMGKD
LPELVVYPLYSSLPPQQQRKIFERAPLPRVPGGPSGRKVVVSTNIAETSLTIDGIVYVVD
PGFSKQKVYNPRIRVESLLVSPISRASARQRAGRAGRTRPGKCFRLYTEKSFHEDLQETT
YPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGELTDL
GYQMSELPLDPQLSKLIITSPEFGCSAEIVSIVACLSVPQVFMRPREAAKAADAAKAQFS
HPDSDHITMLNVYAAYEAIPDRDRRQWCWDNFVNDRAMQNAYNVRQQLLGIMRKLDLPLV
SSDRKGDGSFAFTDIRRALTAGMFMHVAYRQRSGDYLTAKDNQLVALHPSSVVISRPDWV
LFEEFALTTRNFIRTVTVTNIDWLVSMAPHYFDLENFPECEAKAELEQAYARLAHSRRKT
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtcgaaagcaaaggattgatttgggagaatcatcccgggaagcttccaccaat
aagcgcagcaaatgtgagacgccaaataatatcaatccatggactggagctccttattcg
gctcgctacctctccatcctcgaaactcggcaaacacttcccgtctacttgttcagagat
aatctggtagaagctgtcaagaataatcaaattgttgttgtggaaggtcagactggttcc
ggaaagacgacgcagattccccagttcattttagaagctggtttcgtcacaccaggagaa
acctcaattgcttgtacgcagccacgacgtgtggccgccacgagtatcgcgcaacgtgtg
gcagaagaaatggatgtggaattaggtcaagaagttggctacaccattcgctttgaagat
gtcagtgatccggttaagacagtgctgaaatacgtaacggacggtatgcttttgcgagag
gccatgtcggatcctttgctaaagagatattcttgcatcgtcctagacgaagctcacgaa
cggaccctctcgacggatgtcctaatgggactcttgatggaggtattgccaaagagaata
ccgggatccaagtatggggagctcaaggtggtgattatgtctgctacattggacgccgaa
aaatttcaagagtattttcacggcgctccactcatgaaggtgcctggacgaacgcatcca
gtggaagttttttatacgtcaaaaccggaagcaaattacgtggaagctgccgttcgtacg
accatgcatattcatgaatgtgaaggtccaggagatattctggtttttctcacgggagaa
caagaaattgagcaggcctgcgaagaaatgcgggagaaagcgggagctatgggaaaggac
ttaccggagttagtggtatatccactatattcttcattgccaccgcagcaacaacggaag
atcttcgagagggctcccttaccgcgcgttcccggtggaccttccggacgaaaagtggtg
gtcagcaccaacattgccgaaacatctctgaccattgatggaatcgtttacgtggtagat
cctggtttttcgaagcaaaaggtatacaacccccgcatccgtgtcgaatcccttctcgta
tcgcctatttctcgcgcgagtgctaggcaacgtgccggtcgagcgggacgaacaagaccc
ggaaaatgttttcgactgtacactgagaagagctttcacgaggatttacaagagacaaca
taccctgaaattcttcgatcaaaaatgagcaatgtggttcttacactaaagaaacttggc
atcgatgatcttgttcactttgacttcatggacccacctgccccggaaactttaatgaga
gcattggagcttctgaactaccttggagctttggacgacgaaggcgaactaacagatttg
gggtaccagatgagtgaattaccgctggaccctcagctttccaaactcattataaccagc
cctgagtttggatgctcggctgaaattgtttccattgttgcgtgcttgagtgtgccgcaa
gtattcatgcgcccgcgagaagctgccaaagctgctgatgccgccaaagcacagttttct
caccctgacagcgaccatattacaatgctaaatgtttatgcggcatatgaagcaattcct
gatcgagataggaggcagtggtgctgggataactttgtcaacgatagggcgatgcagaac
gcctacaatgtgcggcaacaacttttgggtattatgaggaagctcgatttacctcttgtt
tcttcggatagaaaaggagacggctcgtttgcttttaccgatattcgacgcgcgttgact
gctgggatgttcatgcatgtagcttatcgccaaaggtcaggagattatttgacagcgaaa
gacaaccaattggttgctctccatccaagctcagttgtgatttcacgaccagattgggtc
ttattcgaggagtttgcgttgacgacaaggaattttattcgaaccgtgactgtaaccaat
atcgattggttagtttctatggcaccacactacttcgatcttgagaactttcctgaatgc
gaggcaaaggcagagcttgaacaagcgtatgccagacttgctcattcacgtcgtaaaaca
tag
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integrated database retrieval system
