KEGG   Phaeodactylum tricornutum: PHATRDRAFT_24820
Entry
PHATRDRAFT_24820  CDS       T01075                                 
Symbol
CPN60_1
Name
(RefSeq) mitochondria-targeted chaperonin
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATRDRAFT_24820 (CPN60_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_24820 (CPN60_1)
   03110 Chaperones and folding catalysts [BR:pti03110]
    PHATRDRAFT_24820 (CPN60_1)
   03029 Mitochondrial biogenesis [BR:pti03029]
    PHATRDRAFT_24820 (CPN60_1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pti04147]
    PHATRDRAFT_24820 (CPN60_1)
Enzymes [BR:pti01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     PHATRDRAFT_24820 (CPN60_1)
Messenger RNA biogenesis [BR:pti03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PHATRDRAFT_24820 (CPN60_1)
Chaperones and folding catalysts [BR:pti03110]
 Heat shock proteins
  HSP60 / Chaperonin
   PHATRDRAFT_24820 (CPN60_1)
Mitochondrial biogenesis [BR:pti03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    PHATRDRAFT_24820 (CPN60_1)
Exosome [BR:pti04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PHATRDRAFT_24820 (CPN60_1)
  Exosomal proteins of other body fluids (saliva and urine)
   PHATRDRAFT_24820 (CPN60_1)
  Exosomal proteins of breast cancer cells
   PHATRDRAFT_24820 (CPN60_1)
  Exosomal proteins of colorectal cancer cells
   PHATRDRAFT_24820 (CPN60_1)
  Exosomal proteins of bladder cancer cells
   PHATRDRAFT_24820 (CPN60_1)
SSDB
Motif
Pfam: Cpn60_TCP1 MGAT2
Other DBs
NCBI-GeneID: 7196793
NCBI-ProteinID: XP_002176830
JGI: 24820
UniProt: B7FQ72
LinkDB
Position
1:1669080..1671306
AA seq 579 aa
MLSSSISRAASRSLTGRTNLTSVRGFAKQIKFGVEGRAAMLRGVDTLADAVQVTLGPKGR
NAIIAQPYGPPKITKDGVTVAKSIDFEDKFEDMGAQLIKSVASKTNDIAGDGTTTATVLA
RAIYSEGCKAVAAGLNPLDLRRGIQLAVNSVVKTLGEISRPISSKAEVSQVGTISANADR
EIGDLIADAMERVGKEGVITVQDGKTLENVLDVVEGMKFERGFISPYFITDAKTQTCELE
NPMILLVEKKVSNLQQLVPLLESVIKSQSSLLIVAEDVESEALATLVVNKLRAGIKVCAV
KAPGFGDNRKATMQDLAILTGGTVISEEMGMKLEETQPHHLGRCKKVTVTKNETVVLDGA
GEQASIQERCELIRNGIDTTKSDYEREKLQERLAKLSGGVAVIQVGGASEVEVQEKKDRV
VDALNATRAAVEEGIVPGGGKALLYCSTKLDEVAEKEAINMDQKIGVEIIKRALKAPLAT
IVSNAGEEGAVVCGELIKPDVAVTWGFDASIGEYRDLVEAGIIDPTKVTRTGIVDAASVA
GLLTTSESMIADKPDDGPSMPPGGGMGGMGGMGGMGGMM
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgttgtcgtcctccatctctagagctgcttctcgttcgctgactggccgaacgaacttg
acttcggttcgaggatttgccaaacaaatcaaatttggcgtcgaaggtcgcgctgccatg
cttcgtggcgtggacacgttggcggatgccgtccaggtgacgcttggccccaagggtcgt
aacgccattattgctcagccttacggccctcccaagatcaccaaagatggtgtcacggtc
gcgaaatccattgattttgaagacaagtttgaagatatgggtgcgcagttgatcaagtcg
gttgcttccaagacgaacgatatcgctggagacggcacgactacggctacagtcctcgcc
cgggcgatctattccgagggctgcaaggctgtggcggctggactcaacccgttggatctt
cgacgaggaatccaacttgccgtgaactcggtagtaaagacgttgggagaaattagtcgc
cctatctcgtccaaggcggaagtctcacaggtcggaacgatctcggcaaacgcggaccgt
gaaatcggtgatttgattgccgatgccatggaacgtgttggtaaagaaggcgtcattact
gttcaagacggaaagactttggagaacgtactggatgtggtcgagggtatgaagttcgaa
cgaggattcataagtccttactttattacggacgcgaaaactcagacgtgcgagcttgaa
aatccaatgatcctgctcgtagaaaagaaagtcagtaatcttcaacagcttgtgcccctt
ttggaatctgtgattaagagccaaagctccttgttgattgttgccgaagatgttgaaagt
gaggcccttgccactttggtggtaaacaagcttcgtgccggcattaaggtgtgtgccgta
aaggctcctggatttggcgacaaccgcaaggccacgatgcaggatctggccattttgacc
ggaggaaccgttatttcggaagaaatgggtatgaagttggaagaaacgcagccgcaccac
ttgggacgatgcaaaaaggtgaccgtcaccaagaacgagactgttgtgttggatggagct
ggcgagcaagcttcaatccaggaacgatgcgagttgatccgtaacggaattgatactacc
aagtcggactacgaacgtgaaaagctgcaagaacgtctcgcgaagttgtcaggaggagtc
gccgtgattcaggtcggaggtgcttcggaagtcgaagttcaggaaaagaaagaccgtgtc
gttgacgccttgaacgcaactcgggctgctgtcgaagaaggtattgtaccgggaggtggg
aaagccttgctttactgctcaacgaaattggacgaagttgctgaaaaagaagcgatcaac
atggaccaaaagattggtgttgaaatcatcaagcgagccctcaaggccccgctcgctact
atcgtttccaacgccggagaagaaggtgccgtcgtctgcggcgaacttattaagcctgat
gttgcagtgacatggggatttgatgcttccataggggagtaccgtgatttagtcgaagcc
ggtatcattgatccaactaaggtgacccgtactggcatcgttgatgctgcatccgttgct
ggcttgctcacaacatcggaatccatgattgcggacaagccggatgatggcccatccatg
cctccgggcggcggtatgggaggaatgggcggcatgggtggcatgggcggcatgatgtag

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