Phaeodactylum tricornutum: PHATRDRAFT_24996
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Entry
PHATRDRAFT_24996 CDS
T01075
Symbol
Sec13
Name
(RefSeq) hypothetical protein
KO
K14004
protein transport protein SEC13
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03013
Nucleocytoplasmic transport
pti04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PHATRDRAFT_24996 (Sec13)
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PHATRDRAFT_24996 (Sec13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_24996 (Sec13)
04131 Membrane trafficking [BR:
pti04131
]
PHATRDRAFT_24996 (Sec13)
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
PHATRDRAFT_24996 (Sec13)
Membrane trafficking [BR:
pti04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
PHATRDRAFT_24996 (Sec13)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
PHATRDRAFT_24996 (Sec13)
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
PHATRDRAFT_24996 (Sec13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_SCAP
Vgb_lyase
Beta-prop_IFT140_1st
GspL_M
Motif
Other DBs
NCBI-GeneID:
7196908
NCBI-ProteinID:
XP_002176922
JGI:
24996
UniProt:
B7FQT0
LinkDB
All DBs
Position
1:2165068..2166267
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AA seq
330 aa
AA seq
DB search
MATTTASTAIAAPTEASSAPIYIDTQHEDLVHDAQMDYYGAKLATCSSDRTVKVYNVSDS
AYELSATLQGHEGPVWQVSWAHPKFGVVLASCSFDGSVLIHRESRPREWTMLHAARQLHD
SSINGVAFAPHEYGLQLATASSDGKVSVLQHQPNNTWAVEYLTDCPMGVNAVSWAPYGAY
YDPSAASPTDQVQEPRLVTAGCDNAIRFWKCQDGTTWVPDEAKLDTAHQHSDWVRDVAWA
PSLLPNHNIVASCAEDKTVLIWKQEGLGQDWKPTLLHQFEAPVWRVSWSVTGLLLAVSSG
DSDVTLWKAGLDGQWTQVSTVEDTPPEPST
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacgacggcgtctaccgctattgcggcaccaacggaggcttcttctgccccg
atctatattgacactcaacacgaagacctagtacacgatgctcagatggattactacggc
gccaagctggcgacgtgcagctccgaccgtaccgttaaagtgtacaacgtatcggattcc
gcctacgagctttccgcgacgctccagggtcacgaaggtcccgtctggcaggtttcctgg
gcacatcccaagttcggcgtagtcctcgcatcctgctcgttcgatggtagtgttctgatt
caccgtgaaagccgaccccgcgaatggaccatgctacacgcggctcgtcaactgcacgat
tcctccattaacggtgtggcctttgctccgcacgaatatggtttgcagctggcgacggcg
tcctccgacggcaaggtcagcgtcctccagcaccagcccaacaatacgtgggccgtcgaa
tacctcacggattgccccatgggtgtcaatgcggtgagctgggcaccctacggggcgtac
tacgacccgtccgcggcgtccccgacggatcaggtccaggaaccccgactcgtgacggca
ggatgcgacaatgccatacgattttggaagtgccaggacggtacaacttgggttccggat
gaggctaaattggataccgcacatcaacactcggactgggtacgggatgtggcgtgggca
ccctcgctactgccgaatcacaatattgtcgccagctgtgcggaggacaagacggtattg
atttggaaacaggaaggactgggacaagattggaagcctacgcttctacaccaatttgaa
gcacccgtctggagagtcagttggagcgtcacgggactcctattggcggtttcgtcggga
gattccgacgtcaccttgtggaaagcggggctagatggacaatggacgcaggtttccacc
gtggaagacacacctcctgagccgtcgacataa
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integrated database retrieval system