KEGG   Phaeodactylum tricornutum: PHATRDRAFT_24996
Entry
PHATRDRAFT_24996  CDS       T01075                                 
Symbol
Sec13
Name
(RefSeq) hypothetical protein
  KO
K14004  protein transport protein SEC13
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03013  Nucleocytoplasmic transport
pti04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHATRDRAFT_24996 (Sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    PHATRDRAFT_24996 (Sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_24996 (Sec13)
   04131 Membrane trafficking [BR:pti04131]
    PHATRDRAFT_24996 (Sec13)
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     PHATRDRAFT_24996 (Sec13)
Membrane trafficking [BR:pti04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    PHATRDRAFT_24996 (Sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    PHATRDRAFT_24996 (Sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    PHATRDRAFT_24996 (Sec13)
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP Vgb_lyase Beta-prop_IFT140_1st GspL_M
Other DBs
NCBI-GeneID: 7196908
NCBI-ProteinID: XP_002176922
JGI: 24996
UniProt: B7FQT0
LinkDB
Position
1:2165068..2166267
AA seq 330 aa
MATTTASTAIAAPTEASSAPIYIDTQHEDLVHDAQMDYYGAKLATCSSDRTVKVYNVSDS
AYELSATLQGHEGPVWQVSWAHPKFGVVLASCSFDGSVLIHRESRPREWTMLHAARQLHD
SSINGVAFAPHEYGLQLATASSDGKVSVLQHQPNNTWAVEYLTDCPMGVNAVSWAPYGAY
YDPSAASPTDQVQEPRLVTAGCDNAIRFWKCQDGTTWVPDEAKLDTAHQHSDWVRDVAWA
PSLLPNHNIVASCAEDKTVLIWKQEGLGQDWKPTLLHQFEAPVWRVSWSVTGLLLAVSSG
DSDVTLWKAGLDGQWTQVSTVEDTPPEPST
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcgaccacgacggcgtctaccgctattgcggcaccaacggaggcttcttctgccccg
atctatattgacactcaacacgaagacctagtacacgatgctcagatggattactacggc
gccaagctggcgacgtgcagctccgaccgtaccgttaaagtgtacaacgtatcggattcc
gcctacgagctttccgcgacgctccagggtcacgaaggtcccgtctggcaggtttcctgg
gcacatcccaagttcggcgtagtcctcgcatcctgctcgttcgatggtagtgttctgatt
caccgtgaaagccgaccccgcgaatggaccatgctacacgcggctcgtcaactgcacgat
tcctccattaacggtgtggcctttgctccgcacgaatatggtttgcagctggcgacggcg
tcctccgacggcaaggtcagcgtcctccagcaccagcccaacaatacgtgggccgtcgaa
tacctcacggattgccccatgggtgtcaatgcggtgagctgggcaccctacggggcgtac
tacgacccgtccgcggcgtccccgacggatcaggtccaggaaccccgactcgtgacggca
ggatgcgacaatgccatacgattttggaagtgccaggacggtacaacttgggttccggat
gaggctaaattggataccgcacatcaacactcggactgggtacgggatgtggcgtgggca
ccctcgctactgccgaatcacaatattgtcgccagctgtgcggaggacaagacggtattg
atttggaaacaggaaggactgggacaagattggaagcctacgcttctacaccaatttgaa
gcacccgtctggagagtcagttggagcgtcacgggactcctattggcggtttcgtcggga
gattccgacgtcaccttgtggaaagcggggctagatggacaatggacgcaggtttccacc
gtggaagacacacctcctgagccgtcgacataa

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