Phaeodactylum tricornutum: PHATRDRAFT_25417
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Entry
PHATRDRAFT_25417 CDS
T01075
Symbol
GMD1
Name
(RefSeq) gdp-mannose 4,6-dehydratase
KO
K01711
GDPmannose 4,6-dehydratase [EC:
4.2.1.47
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti00051
Fructose and mannose metabolism
pti00541
Biosynthesis of various nucleotide sugars
pti01100
Metabolic pathways
pti01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00051 Fructose and mannose metabolism
PHATRDRAFT_25417 (GMD1)
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PHATRDRAFT_25417 (GMD1)
Enzymes [BR:
pti01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.47 GDP-mannose 4,6-dehydratase
PHATRDRAFT_25417 (GMD1)
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Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NmrA
Motif
Other DBs
NCBI-GeneID:
7197497
NCBI-ProteinID:
XP_002178058
JGI:
25417
UniProt:
B7FSX7
LinkDB
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Position
2:complement(1050507..1051858)
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AA seq
363 aa
AA seq
DB search
MSECEGRVALVTGITGQDGSYLAELLLDKGYTVHGIVRRSSCFNTGRIDHLYRDRHDTQV
KLFLHYGDLCDASNLITIISSVKPDEIYNLGAMSHVKVSFDMPEYTADCDGLGVLRMLDA
VRAAGLEQSVKFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYG
MHLTNGILFNHESPRRGRTFVTRKITCAVAAIKEKQQKTLYLGNLDAKRDWGHARDYVEG
MWMMLQQETSDDYVLATGETHTVREFVELAFAAVDITVKWKGEFGTIDEIGVDADNEDHI
LVKIDPRYFRPTEVELLLGDPTKAKEKLGWTSSTPFPDLVKEMVKEDLAMVRGTSVDPEK
LLD
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaatgcgaaggacgtgttgcactcgttaccggtattacgggacaggatgggtct
taccttgcggaactattgctggacaagggctacacggtacacggtattgtccgtcggtct
tcttgcttcaacacgggtcgtattgatcatctttaccgtgatcgtcacgacacgcaagta
aagctcttcttgcactacggcgatctgtgcgacgccagcaatttgatcacgatcatttcg
tccgtcaagcccgatgaaatctacaatctgggtgccatgagccacgtcaaggtctccttc
gacatgcccgaatatacggctgactgcgacggactcggtgttctgcgcatgttggacgct
gtacgtgcggcgggcttggaacagtcagtcaagttttaccaagcttccaccagtgaactc
tacggcaaggttcaagaagttccgcaatccgaaaccactcctttttatccccgttcccct
tatgctgttgccaagcagtacgccttttggattctcgtcaattaccgtgaggcctacggc
atgcacttgacaaacgggattttgttcaatcacgagtctcctcgacgtggtcgtaccttt
gtgacccgcaagattacatgcgcggtggctgctattaaagaaaagcaacagaagactctt
tatctaggaaaccttgacgccaagcgcgattggggccacgcacgtgattacgtcgaaggc
atgtggatgatgctccaacaagagacttcggacgattatgtcttggcgacgggagaaacg
cacaccgtgcgtgaattcgtggagctcgcttttgccgcagtcgatattaccgtcaaatgg
aagggtgagttcggtactattgatgaaatcggcgtcgatgcggataacgaagatcacatc
cttgtcaagatcgatccacgatacttccgtcctacggaagttgagctcttgttgggagat
cccaccaaagcgaaggaaaagcttggatggacttcgtctacgcctttccccgatttggtc
aaggaaatggtgaaagaagatctcgcgatggttcgtggtactagcgtagatccggaaaag
ttactcgactga
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