Phaeodactylum tricornutum: PHATRDRAFT_2648
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Entry
PHATRDRAFT_2648 CDS
T01075
Symbol
CDH1
Name
(RefSeq) hypothetical protein
KO
K03364
cell division cycle 20-like protein 1, cofactor of APC complex
Organism
pti
Phaeodactylum tricornutum
Pathway
pti04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
PHATRDRAFT_2648 (CDH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pti04121
]
PHATRDRAFT_2648 (CDH1)
Ubiquitin system [BR:
pti04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
PHATRDRAFT_2648 (CDH1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
ANAPC4_WD40
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
WDR55
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_HPS5
eIF2A
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
WD40_RFWD3
Ge1_WD40
Beta-prop_Vps41
LVIVD
Aldo_ket_red
Motif
Other DBs
NCBI-GeneID:
7200617
NCBI-ProteinID:
XP_002179858
JGI:
2648
UniProt:
B7FY19
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Position
7:complement(507721..508698)
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AA seq
326 aa
AA seq
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KRKRRISKVPFKVLDAPALKDDYYLNLVDWSSQNVLAVALGSCVYLWSACNSKVTKLCDL
SLSNSSSSASEDSVTSVSWAQRGTHLAVGTNRGDVELWDTTKGKRIRSMPGHTARVGTLA
WHGPTLASGSRDRLIFLRDVRVQSAYTDQLDFHKQEVCGLKWSFDDPGLLASGGNDNDLH
VIDSRNPSSPVHKFSEHRAAVKAIAWSPHQHGLLASGGGTSDRCIRFWNTQSGVALHKID
TGSQVCNIAWSRNCNEIVSTHGYSLNQIIVWRYPSMSKVATLTGHSYRVLYLAMSPDGST
VVTGAGDETLRFWQIFPGPQSDNKDN
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
aagcgtaagcgacgcatttccaaagttcctttcaaggtcctcgatgctccagctctcaag
gatgattactacctcaatctcgtcgactggtcttcgcaaaatgttttggcggttgctctc
gggtcatgcgtatacctgtggagtgcttgcaattcaaaagtgaccaaattgtgcgatctg
tcattgtccaattcttcttcctcagcatcggaagattctgttacgtcggtttcttgggca
cagcgaggtacgcatttggccgttgggactaatcgcggagacgtagagctgtgggataca
acaaagggcaagcgcatacgctccatgcccggtcatacggcacgcgtcggaactttggcc
tggcacggtccgacgttagcgagcggcagtcgcgatcgtcttattttcttgcgtgacgtg
cgcgtacaatcggcctacacagaccagttggattttcacaaacaagaagtctgcggtctt
aaatggtcctttgacgatccaggtttgcttgcatcgggcggcaacgacaacgacttgcac
gtgatcgatagccgtaatccatcgtctcccgtccacaagttttccgaacaccgtgctgcg
gtcaaggctattgcctggtcgccgcatcagcacgggcttttggctagcggaggagggaca
tccgatcgctgcattcgcttttggaatacgcaaagtggtgtcgctctccacaaaatcgat
accggtagccaagtttgcaacattgcgtggtctcgtaattgcaacgagattgtgagcacg
catggatattcgctgaaccagatcatcgtttggaggtatcctagtatgagcaaggtcgca
acgttgacgggacattcttatagagttttgtatttggctatgtcacccgacggatctacg
gtagtcactggcgcaggtgatgagactctacgcttctggcaaatcttccctggtccgcaa
tctgacaacaaggacaat
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integrated database retrieval system