KEGG   Phaeodactylum tricornutum: PHATRDRAFT_2648
Entry
PHATRDRAFT_2648   CDS       T01075                                 
Symbol
CDH1
Name
(RefSeq) hypothetical protein
  KO
K03364  cell division cycle 20-like protein 1, cofactor of APC complex
Organism
pti  Phaeodactylum tricornutum
Pathway
pti04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PHATRDRAFT_2648 (CDH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pti04121]
    PHATRDRAFT_2648 (CDH1)
Ubiquitin system [BR:pti04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   APC/C
    Target recognizing subunit
     PHATRDRAFT_2648 (CDH1)
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_WDHD1_1st WD40_Prp19 ANAPC4_WD40 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML WDR55 Beta-prop_RIG_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 eIF2A Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 WD40_RFWD3 Ge1_WD40 Beta-prop_Vps41 LVIVD Aldo_ket_red
Other DBs
NCBI-GeneID: 7200617
NCBI-ProteinID: XP_002179858
JGI: 2648
UniProt: B7FY19
LinkDB
Position
7:complement(507721..508698)
AA seq 326 aa
KRKRRISKVPFKVLDAPALKDDYYLNLVDWSSQNVLAVALGSCVYLWSACNSKVTKLCDL
SLSNSSSSASEDSVTSVSWAQRGTHLAVGTNRGDVELWDTTKGKRIRSMPGHTARVGTLA
WHGPTLASGSRDRLIFLRDVRVQSAYTDQLDFHKQEVCGLKWSFDDPGLLASGGNDNDLH
VIDSRNPSSPVHKFSEHRAAVKAIAWSPHQHGLLASGGGTSDRCIRFWNTQSGVALHKID
TGSQVCNIAWSRNCNEIVSTHGYSLNQIIVWRYPSMSKVATLTGHSYRVLYLAMSPDGST
VVTGAGDETLRFWQIFPGPQSDNKDN
NT seq 978 nt   +upstreamnt  +downstreamnt
aagcgtaagcgacgcatttccaaagttcctttcaaggtcctcgatgctccagctctcaag
gatgattactacctcaatctcgtcgactggtcttcgcaaaatgttttggcggttgctctc
gggtcatgcgtatacctgtggagtgcttgcaattcaaaagtgaccaaattgtgcgatctg
tcattgtccaattcttcttcctcagcatcggaagattctgttacgtcggtttcttgggca
cagcgaggtacgcatttggccgttgggactaatcgcggagacgtagagctgtgggataca
acaaagggcaagcgcatacgctccatgcccggtcatacggcacgcgtcggaactttggcc
tggcacggtccgacgttagcgagcggcagtcgcgatcgtcttattttcttgcgtgacgtg
cgcgtacaatcggcctacacagaccagttggattttcacaaacaagaagtctgcggtctt
aaatggtcctttgacgatccaggtttgcttgcatcgggcggcaacgacaacgacttgcac
gtgatcgatagccgtaatccatcgtctcccgtccacaagttttccgaacaccgtgctgcg
gtcaaggctattgcctggtcgccgcatcagcacgggcttttggctagcggaggagggaca
tccgatcgctgcattcgcttttggaatacgcaaagtggtgtcgctctccacaaaatcgat
accggtagccaagtttgcaacattgcgtggtctcgtaattgcaacgagattgtgagcacg
catggatattcgctgaaccagatcatcgtttggaggtatcctagtatgagcaaggtcgca
acgttgacgggacattcttatagagttttgtatttggctatgtcacccgacggatctacg
gtagtcactggcgcaggtgatgagactctacgcttctggcaaatcttccctggtccgcaa
tctgacaacaaggacaat

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