KEGG   Phaeodactylum tricornutum: PHATRDRAFT_27118
Entry
PHATRDRAFT_27118  CDS       T01075                                 
Symbol
UBI3
Name
(RefSeq) ubiquitin extension protein 3
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03010  Ribosome
pti04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    PHATRDRAFT_27118 (UBI3)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PHATRDRAFT_27118 (UBI3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:pti03011]
    PHATRDRAFT_27118 (UBI3)
   04121 Ubiquitin system [BR:pti04121]
    PHATRDRAFT_27118 (UBI3)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pti04147]
    PHATRDRAFT_27118 (UBI3)
Ribosome [BR:pti03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    PHATRDRAFT_27118 (UBI3)
  Archaea
    PHATRDRAFT_27118 (UBI3)
Ubiquitin system [BR:pti04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   PHATRDRAFT_27118 (UBI3)
Exosome [BR:pti04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PHATRDRAFT_27118 (UBI3)
  Exosomal proteins of colorectal cancer cells
   PHATRDRAFT_27118 (UBI3)
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Dsc3_N Ubiquitin_5
Other DBs
NCBI-GeneID: 7200607
NCBI-ProteinID: XP_002179851
JGI: 27118
UniProt: B7FY02
LinkDB
Position
7:complement(467666..468323)
AA seq 155 aa
MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGGKKRKKKVYTKPKKVKRVNKTIPLQTLKYYRVESDGKVTRLRKY
SPVAGIGCFMAQHVDRYYCGKSGTTFMYDDMKESE
NT seq 468 nt   +upstreamnt  +downstreamnt
atgcaaattttcgtcaaaactctgacgggaaagaccatcacccttgatgtcgaacccagt
gatacgatcgacaacgtcaaaactaagatccaggacaaggaaggcattcctccggatcag
caacgattgatctttgctggcaagcaactggaagatggccgtacactgtcggactacaac
attcagaaagaatccacccttcatttggtgcttcgtctacgtggaggaggtaagaaacgt
aaaaagaaggtctacaccaagcccaagaaggtcaagcgcgtcaataagaccattccgttg
caaactctcaagtattaccgggtggaatcggacggcaaggtcactcgcctccgaaagtac
agccccgtcgctggcattggatgcttcatggcacaacacgttgatcgttactactgtgga
aagtcgggaaccaccttcatgtacgatgatatgaaggaaagcgagtaa

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