Phaeodactylum tricornutum: PHATRDRAFT_28482
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Entry
PHATRDRAFT_28482 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHATRDRAFT_28482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_28482
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_28482
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PHATRDRAFT_28482
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PHATRDRAFT_28482
U7-dependent histone pre-mRNA processing factors
PHATRDRAFT_28482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
CPSF73-100_C
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
7202166
NCBI-ProteinID:
XP_002181194
JGI:
28482
UniProt:
B7G2E4
LinkDB
All DBs
Position
12:368268..>370470
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AA seq
602 aa
AA seq
DB search
MEDIMSITPLGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEPDQVDVL
LITHFHLDHVASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYLRLLQMKNAKPEDVLYT
EADLQSCIDKIELMDFHTTVTVGGLSFYALNAGHVLGACMFFLSLGGRKILYTGDYSMED
DRHLMAAEIPAESPDVLIVEATYGVQVHASRAEREARFTGTIERVISRGGRCLIPVFALG
RAQELLLILDEYWQANPHLQNIPIWYASKLASRALRVYQTYANMMNARIRSQMDVSNPFR
FRFIQNLKSIDVNSFDDSGPSVVFASPGMLQSGVSRQLFDRWASDHKNGVLIAGYAVEHT
LAKEIMAQPKEVVTLEGRRQPLNALVDYVSFSAHVDFVQNRSFINQVAPKHIILVHGQKD
EMGRLKSALLLQYKQFPENKRPTITMPPNLQEVKLKFARRRSAKVMGSLADRQKEPKEGE
EVRGILVTHNFHSKLVAPEDLATYTPLRVGSIASKLHVPFVGSLATLRLFLTEMFAGVSE
STEESEDSTRTIFQLVNEVCKLSVKVTLGANKGVAIVEWMASPQGDILADAVVALLMHAQ
SS
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaagatatcatgtccataactccgctggggtcgggccaagaagtcggacgttcctgc
cacctgcttgaatttcgcggaatgacaattctcttggactgcggcattcatcctgggtac
gatgggttgaatggactcccttatctcgatcgaattgagcctgatcaggttgacgtcttg
ctcatcacccactttcatctagatcacgtcgcttcgttaccctatttgaccgaacgaact
tcctttaaaggccgcatctttatgactcatcctaccaaggcggtgacgcgattgcttctt
ggggattatctccgactcttgcaaatgaaaaacgccaaacccgaagacgtactgtacacg
gaagccgatcttcagtcttgcatcgataagatcgagctcatggattttcataccacagtc
acggtcggcggtttgtcattttacgcgttgaatgccggccacgtgctcggtgcttgcatg
ttctttctcagtctcggtggacgcaaaatattgtacacgggcgactactccatggaagat
gatcgccacttgatggcggccgaaattcctgccgagtcccccgacgtgctgattgtagag
gccacgtacggtgtgcaagtacacgcgagtcgcgccgagcgcgaagcccgctttaccgga
accatcgaacgagtcatatcgcgcggcggcagatgcctcataccagtctttgcactgggg
cgagcccaggaattgttgctcattctggacgagtactggcaggcaaatccgcatttgcaa
aacattcccatttggtacgctagtaagctggcttctcgggcactacgtgtctatcaaacg
tacgcgaatatgatgaacgcacggatacgctcccaaatggacgtgtccaatcctttccga
tttcgtttcattcaaaatctcaaatccattgacgtcaattcgtttgacgactccggtcct
tcggtcgtttttgcctctccagggatgttgcagtctggagtttcgcggcagctatttgat
cgctgggcgtcggatcacaagaatggtgtgttgattgccggttacgctgttgagcacaca
cttgccaaagaaatcatggcgcaacccaaagaagttgttacactggaaggtcgtcgacaa
ccgttaaatgccctagtggactacgtcagtttctcggcgcacgttgattttgtacaaaac
cgctcttttatcaatcaagtggcgccgaaacacattattctcgtacatggacagaaggat
gaaatgggacgactcaagagtgctttactgctacagtataagcagtttccggagaataaa
cgtccaacgattaccatgccaccgaatttacaggaagtcaaacttaaatttgcacgtcgg
cgatcggccaaggtcatgggatcgttagcagatcgacaaaaagagcctaaagaaggggaa
gaagtccggggtattcttgtcacgcataactttcattcgaaattggttgctcccgaagac
ttagccacctacactcccttgcgagtcggctcgatcgccagtaagctgcacgttccattt
gttggatctcttgcgactttgcgattatttttgacggaaatgtttgctggggtatcggaa
agtacggaagaatcagaggactcgacgcggaccattttccaacttgtgaacgaggtgtgt
aaactgagcgttaaagtcacgttaggtgcgaacaagggagtagcgattgtcgaatggatg
gcaagtccccaaggtgatattttggctgatgctgttgtcgcgctgttaatgcacgcgcag
agcagt
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