Phaeodactylum tricornutum: PHATRDRAFT_28551
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Entry
PHATRDRAFT_28551 CDS
T01075
Symbol
NURF-140
Name
(RefSeq) imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PHATRDRAFT_28551 (NURF-140)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_28551 (NURF-140)
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_28551 (NURF-140)
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
PHATRDRAFT_28551 (NURF-140)
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
PHATRDRAFT_28551 (NURF-140)
RSF complex
PHATRDRAFT_28551 (NURF-140)
WICH complex
PHATRDRAFT_28551 (NURF-140)
B-WICH complex
PHATRDRAFT_28551 (NURF-140)
NORC complex
PHATRDRAFT_28551 (NURF-140)
BRF complex
PHATRDRAFT_28551 (NURF-140)
NuRF complex (fruit fly)
PHATRDRAFT_28551 (NURF-140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
DBINO
AAA_14
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
7201969
NCBI-ProteinID:
XP_002181260
JGI:
28551
UniProt:
B7G2T7
LinkDB
All DBs
Position
12:774580..778431
Genome browser
AA seq
1023 aa
AA seq
DB search
MEGMDLEDDDGQVDEAGDDEEATESDNAPVENEEDFAALATEEAQEMEEARRERTELMAA
EQKKAMGSNPQPLTAAERLEYILAQSDVFAHFLAGSVAAGSKKGKGSRGKKGRMTEAEED
AQLLKSAQSKRRVIRVDQQPSNLAPHCRMHPYQLEGLNWLIKLHDHGINGILADEMGLGK
TLQTISLLAYLRESRGVRGAHMVIVPKSVVGNWIREFKKWCPSIKAIRMGGTKDERQKFV
TEDLPLDPNTGKRKFDVLVTSYEGLLREKGKLSRIPWKYVIIDEAHRIKNENSSLSKVVR
TMKTEFRLLITGTPLQNNLRELWALLNFLMPDIFGDAEQFDEWFSLTDASGKENVIKKLH
TILRPFMLRRVKKDVATSLPPKKETKLYIGLTKMQQEWYVRCLQKDAHELNKLGGPDRNR
LLNVLMQLRKVCNHPYLFDGAEQGPPYIDGPHLWENSGKMQLMHKLLPKLQAKGSRVLIF
CQMTRVLDILEDYFRLTKLEYCRIDGNTDGERRDSQMDEFNAEGSSKFAFLLSTRAGGLG
INLATADIVILYDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFVTEGTVEEKIIERADRKL
FLDAAVIQQGRLAEQHSSLEKGDLMKMVRFGADQILSGTGGTYTDEDIDALIARGEERTT
EMQAKLQTDAQHNLANFSLMAEDEGGTDTFSFGGKNYRDSEKSAGNFINLPQRQRKRNYD
LSGSTGNTGLSGSMKAHAADAAAKKKRKGPALHDYQLFNMSRLHALIEKERALAREELLQ
LAHAKEQGLDTSFVLSSKEEAERRSLLAEGFPDWSRKDFRSFCLSLERHGRYDFNSIAQD
VLRETDKDLQEVQRYFVAFFTNYTRINDWQKILDKIERGEKKILRLRQIRDAIQEKVERH
LEDAISYGSSGRGRGYQEEEDAFLVCMMYRHGYGAAERIRMEIRRAWQFRFDWYFKSRSA
QEIQKRCDMLVRVVERDNAEVREKEAEEERKQERDSFTVPTPQSAKDSFQKVPEGAVAQF
ASN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggagggcatggatctggaggacgacgacggccaagtcgacgaagcgggagacgacgag
gaagcgaccgaatcggacaatgcacccgttgaaaacgaagaagactttgcggctttggcg
acggaagaagctcaggagatggaagaagcgcgtcgggaacgtacggaactcatggcagcc
gagcagaaaaaagccatgggcagcaatccacagcccttgacagcggcggagcgattggaa
tacattctcgcacaatcggacgtctttgcgcattttctggccggatccgtcgcagcgggc
agcaaaaaaggcaaaggttcgcgaggcaaaaagggacgcatgaccgaggccgaagaggac
gcccagcttctcaagtcggcgcagtccaagcgtcgggtgatccgggtcgaccagcagccc
tccaacctagccccgcactgtcgtatgcacccgtatcagctagagggactcaactggctc
attaaattgcacgatcacgggatcaacggaatactggcggacgagatgggtcttggcaaa
acgctccagactatttcgcttttggcctaccttcgggaaagccgcggagtgcggggggca
catatggtcattgtccccaaatcggtcgttggcaattggattcgggagttcaaaaagtgg
tgcccctctatcaaggccattcggatgggaggaaccaaggacgaacgacagaaatttgtc
acggaagacttgcctttggatcccaacactggtaaacgaaagtttgatgtcctcgtcacc
tcgtacgaaggtttgctccgggaaaagggcaaactctccaggattccgtggaaatacgtc
atcattgacgaggcgcaccgtatcaagaatgagaattcgtcgcttagcaaggtcgtccgg
accatgaagaccgaatttcgcttgctcattacgggaactcctttgcagaataatctgcgt
gagctatgggcgcttctcaactttttaatgcccgatatctttggagacgctgagcaattc
gacgaatggttcagtttaacggacgcgtcgggcaaggaaaacgtaatcaagaagctccat
accattttgcgaccgttcatgcttcggcgcgtcaaaaaggacgtcgccacttcgctcccg
cccaagaaggaaacgaaactctacatcgggttgacaaaaatgcaacaggaatggtacgtt
cgttgtctccagaaagatgcgcacgaactaaacaaacttggtggtccggatcgcaatcgc
cttttgaacgttctgatgcagttgcgaaaggtctgcaatcatccgtacctatttgacgga
gccgaacagggcccaccctatattgacgggcctcatctctgggaaaatagtggcaagatg
caacttatgcacaagctattgcccaagctccaagcgaaaggatctcgcgttctcatcttt
tgtcaaatgacccgcgttcttgatatactcgaggactactttcgattgacaaaattggaa
tactgtcgcatcgacggtaacacggacggtgagcgtcgggattctcaaatggacgagttc
aacgccgaaggctcaagcaaatttgcctttcttttgagtactcgtgcggggggtctcggt
atcaatttggcgaccgccgacattgttattctctacgattccgattggaacccccaagtg
gatctccaagcaatggatcgtgcccaccgcataggacaaaccaaaccggtacaggtcttc
cggttcgtgacggagggtaccgtggaagaaaaaatcattgagcgcgccgaccgcaagcta
ttcctcgatgccgcagttattcagcaagggagattggccgagcagcattcgtcgttggaa
aagggcgatctcatgaagatggtacggttcggtgccgatcaaattctcagtggaacaggg
gggacctacactgacgaagatattgacgctttgattgctcgtggagaagagcgtaccacc
gaaatgcaagccaaattgcagactgacgcccaacacaatttggccaacttcagcttgatg
gccgaggacgagggtgggaccgacacattctcttttggaggaaagaattatcgcgattcg
gaaaagtcggccggaaattttatcaacttgccacagcgacaaaggaagcgcaactacgat
ctgagcggctctacgggcaatactggcttgtcaggcagcatgaaagcgcacgccgctgat
gcggcagccaagaagaaacgcaagggaccagcgttacatgactaccaattgtttaacatg
tcacgacttcatgcattgatcgaaaaagagcgcgctctggctcgcgaagagcttttgcaa
ctggctcatgcgaaagagcaaggtcttgatacaagctttgttttgtcctcgaaagaagaa
gccgaacgaaggagcctcttggcggaaggatttccggattggagccgaaaggactttcgc
tccttctgtttgagcttggaacgccacggacggtacgatttcaatagtattgcgcaggac
gttttgcgtgaaacggataaagatttgcaggaagtccaacgctattttgtggcctttttt
acaaactacacgcgaatcaatgactggcaaaagattcttgacaagattgaacgcggggaa
aagaagattctgcgactgcgacaaatccgtgacgctattcaggagaaggtggagcgccat
ttggaagacgcgataagctacggttctagtggccgaggtcggggatatcaggaagaggaa
gatgcctttcttgtttgcatgatgtaccggcatggctatggagcggcagaacgcattcgt
atggaaatccgccgcgcttggcaatttcgattcgactggtactttaaatctcgttcggcg
caagaaatccagaagcgatgtgacatgttggtgcgcgtcgtggaacgcgacaacgctgaa
gtgcgagaaaaagaagcagaagaagaacgtaagcaagaacgggacagctttaccgtcccc
actccacaatcggcaaaggatagtttccaaaaggttcctgaaggagcggttgcccagttt
gcgtctaactaa
DBGET
integrated database retrieval system
