Phaeodactylum tricornutum: PHATRDRAFT_28689
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Entry
PHATRDRAFT_28689 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14807
ATP-dependent RNA helicase DDX51/DBP6 [EC:
5.6.2.7
]
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_28689
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHATRDRAFT_28689
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
Pre-60S particles
Helicases
PHATRDRAFT_28689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
7202429
NCBI-ProteinID:
XP_002181564
JGI:
28689
UniProt:
B7G364
LinkDB
All DBs
Position
13:473036..>474758
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AA seq
453 aa
AA seq
DB search
MVKQPIDQAATAWKIAPFLTNNLKRDGFANFFPIQALAIPDVIASERHAYIQARDVCITA
PTGSGKTLAYVLPVLNSLANRKIRRLRALVVLPSRDLANQVFKVFKSFMEGSDLKVGLAI
GQSDFVAEQMAILALQAFEDGNDHDLPEKRDPQSTIDVLVCTPGRLVDHLDNTPGFSLEH
LRFLIVDEADRLLSQTYHNWIGRVIQSANSGRGGVVGDDTDFNTNDSYRSVASSVCRPVQ
LRKFLVSATLTRDPQKLASLKLVNPKHFDVHQLRTGHQGFFNTNTKKYSMPEGLHEHTVE
CTAEQKPIVLLALVLDQLTPQQSQSSSKQSVIVFTASLDSTHRLARLLQLLWVSAGYGEP
DSVVEFSSALNQHERSALMKRCNDPQDKVSVVVCSDGMSRGMDIDAVRAVINYDVPGLAK
TYVHRCGRTARAGKEGHAISLLKGGQTRQFDKM
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggttaaacaaccaatagatcaagccgccaccgcctggaaaatagcccccttcctgaca
aacaacctaaagcgggacggatttgcaaacttctttcctattcaagcattggcgattcca
gatgtaattgcgagtgagcgtcatgcatatattcaagcacgagacgtttgcatcacggca
ccgactggttcagggaagacgttggcttatgtgctacccgttctcaattcattggctaat
cgcaaaattcgcagattgcgcgccctagttgtgctgccgagtcgcgacctcgccaatcaa
gtcttcaaagtctttaagtcgtttatggaaggctccgatctcaaggtcggcctcgcgatt
ggtcagtccgactttgtggcagaacagatggcgattttggctttgcaggcgtttgaagat
ggcaacgaccacgacttaccggaaaaaagagatccgcaaagcacaattgatgtcctggta
tgcacaccaggacgcttagtggatcacttggacaatacacccggcttctctttggagcat
ttgcgttttctcatcgtagatgaggcagatcgtctactcagtcaaacttatcataattgg
attgggcgggtgatacagagcgcaaattcggggcgcggtggagttgtcggagacgatacc
gactttaacacgaacgattcgtaccgtagcgtcgcttcttccgtttgccgaccggttcag
ttgcgcaagtttctggtttcggctacgctgactcgtgatccgcaaaaattggcctccctc
aagcttgtgaatcccaagcactttgacgtccatcagctcagaaccggccatcaggggttc
ttcaacaccaacacaaagaagtattcaatgccggagggccttcacgaacacacagtcgag
tgcaccgcggagcaaaagcctatcgttcttttagcgcttgtgctggatcagcttacgccc
cagcaatcgcaatccagtagcaagcagagcgtgatagtgtttacggccagtcttgattca
acccatcgtttagctaggctcttacagctactctgggtttcggccggctacggcgagccc
gattcagttgtggaattctctagcgccctcaaccagcacgaacgatcggcgctcatgaag
cgctgtaacgacccccaggacaaagtctccgtcgtagtatgttcggatggcatgtcccgc
ggtatggacattgacgcggtccgagccgtgatcaactacgacgtaccaggtttggccaaa
acctatgttcaccgctgcggacggacagctcgcgccggcaaggaaggacacgcaatcagc
ttactgaagggcggacaaacgcgacagtttgacaaaatg
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