Phaeodactylum tricornutum: PHATRDRAFT_29502
Help
Entry
PHATRDRAFT_29502 CDS
T01075
Symbol
DDB1
Name
(RefSeq) damage-specific DNA binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03420
Nucleotide excision repair
pti04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
PHATRDRAFT_29502 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
PHATRDRAFT_29502 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pti04121
]
PHATRDRAFT_29502 (DDB1)
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_29502 (DDB1)
Ubiquitin system [BR:
pti04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
PHATRDRAFT_29502 (DDB1)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
PHATRDRAFT_29502 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
PHATRDRAFT_29502 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
7203571
NCBI-ProteinID:
XP_002182922
JGI:
29502
UniProt:
B7G6V5
LinkDB
All DBs
Position
17:complement(229215..233824)
Genome browser
AA seq
1284 aa
AA seq
DB search
MSASTKKEAAHYVVTAHPPGGVLLTAKCNFTSPFSLDVLVAKSRRLEVRQLRTTTEGLSP
FPILASVPINGRIVGLVPFKVHGSDTSYVFVLTARQQYAVLAYDRTNSGSAAYPLVTLAS
GTLQSQEHAVLGQEAESGPIVAIDHFHRCIALHVYDGLLTIIPSTRTLASQQLLGTPFHC
RIEERTILHLAFLQIPFEALPQLAVLHQDARGAQHITSHVINWKRKNIFLYGSSSAPAAT
EWLQKSNVDGGSSLIIPVPAEAPPDFAPAKHRSGGVLVVGQRQLTFINNNVTKVVPIPQA
LHLCVEELPADPNGGLPRYLLADEFGNLHMVTIVLVVDKVVALQIDTLGSCTLATSIAYL
REGLVFVGSTLGDPQLIQIHDEPIVDVEDEEDMVGAESSYLSVVEEYTHLGPILDFDLVP
TAPGGGGLGQTEGIHGPSQSQVVTASGSSKSGSLRLIRNGIGMNESAAVEIPGIQNVWSL
RRSFADVDDTYLVQSFVHETRVLGVTTMDDMSQDEKEGDVAPGGTLEEVFLIGLKSSCAT
LYVGNVQAHQNGLLQITEGEVRFATMEAVLDTWLVPSGAAITVGTANEAGQIAVALNGGK
VLYLKIEEGKIRECSGQQMEREVSCLNLNPFAATSHTSSFLAVGLWDDFTVRLFLCLITL
DFSSGTSGNTTSTSTSLSSTGSGVNMLFVGLGDGTLISFAVVERGASIFVQSKKEVCLGT
QRIDLVPLCTEQGGTCVLATGDRPTVIYLAGVGGISANQFNPKLCYSNVNLSAGDDEEED
DVSRPPSQQSIVVNVATPFSSSLLFDSATGGSQRYSLCVADDSFLRMGIIDDIQKLHVTT
CRLGMAPCRIVHCADGRLFAVGCIESGIKQFSLGGDEANMGNCIRFMDDANFDDIHRVDL
EPFEMILSMVYATLRIPSDGDQSDQPVHRPFLLVGTAYAMPDEDEPSRGRILVYSCQADE
ASGTPTSTRAVRQITEMSTQGGVYSICQFYDGNFLCTVNSKTHVVQIVADCGVLRLEYVG
IGHHGHIVSLFVKSRAKPLAIVGDLMRSVSLMQYYPQHETLEEVARDFNPNWTTAVEMLT
DDVYIGAENWNNLFCLRRNKAATSEEIRCRLDNIGEFHLGEMCNKFMSGSLVMPVSSNST
TSSRRATLFGTVEGSLGVILGLDGRTAAFFITLERAIAKTIQPVGGFSHQLYRSCQAELR
VHPAHGFVDGDLVETFLDLDRRTMEAVVAEMNRDGGWEVDDFANSRSDENNDSSKDTDRI
NLEERSELSIDDVLAMVEEMTMLH
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcttctaccaagaaggaagcggcgcactacgtggtgaccgcacatccgccggga
ggggttttgttgacggcgaaatgcaactttacgtcacccttttcgctagacgtattggtc
gccaaatcgcgccgtctcgaagtccgtcagctgcgcacgacgacggaagggctttcaccc
tttcctatcctcgccagtgtccccattaacggtcgcattgtgggtctcgtccccttcaag
gttcacggtagtgacacatcctacgtattcgtgctgacggcgcggcagcaatacgcggtc
ctcgcctacgatcgaacgaacagcgggtctgcggcctatcccctcgtgaccctggcttcg
ggaaccttgcagagtcaggaacacgcagttttgggacaagaagcggaatcgggaccaatc
gtagcgattgatcattttcaccgttgtattgcgctacacgtctatgatggtctcctcacg
atcattcccagtacccgtacactcgcgtcgcaacagcttttggggacgccatttcattgc
cgtatcgaagaacgtaccattctgcacctggcctttttgcaaatacccttcgaagccttg
ccccaactagcagtcttgcaccaggatgctcgcggggcacagcacatcacgtcgcacgtc
atcaattggaaacgcaaaaatatatttctgtacggatcctcctcggcaccggctgctacc
gaatggttacaaaaatccaacgtcgatggcggatcgtcgttgattatccccgtccccgcg
gaagccccaccggatttcgctcccgccaaacatcgttctggcggagtgctggtggtaggt
caacgccaacttacctttatcaataacaatgtaaccaaggtcgtgcctattccacaggca
ctccatctgtgtgtggaagaattgcccgccgatcccaacggtggcttgccccgatactta
ctggccgatgagtttggcaatctgcacatggtcaccattgtgctcgtggtcgataaggtc
gtggcactccaaatagacacgttgggttcctgtacattggcaacgtctatcgcctattta
cgggaaggtctcgtctttgttgggtccaccttgggcgatccgcagcttattcaaatacac
gacgagcccattgtcgacgtcgaagacgaagaagacatggttggagccgaatcatcctac
ctcagtgtagtggaagagtatacgcatctcggacccattttagattttgatctcgttccg
actgctccgggcggtggtgggcttggccagactgagggaattcacggtccgtctcaatcc
caagtcgtgacagcgtcgggttcatccaaatcgggttcactccgtttaattcgtaacgga
attggcatgaatgaatcagcggcggtcgaaattcccggcatacaaaacgtatggagcttg
cgacgatcgtttgccgatgttgacgatacgtatctggtacaatcgttcgtgcacgaaaca
cgcgtactaggagtgacgacaatggatgacatgtctcaagacgagaaagaaggcgatgtt
gctccgggaggcactctggaagaagtttttcttatcggcctgaagtcatcctgtgcaacg
ctatacgtcggtaacgtccaagcgcaccagaatggtctgcttcaaatcacagaaggggaa
gtgcgattcgccacaatggaggccgtgttggacacgtggctcgtcccatccggggcggcc
attactgtgggcacagccaacgaagctggacaaatagcagttgccctcaatggcggaaag
gtgctttatttgaagatagaagaagggaagatccgggaatgttcggggcagcaaatggaa
cgcgaagtcagttgtttgaacttgaatccctttgctgccacatcacacacgagcagtttt
ctagccgtcggcttgtgggacgatttcacggtccgtctcttcctctgtttgataacgttg
gacttttccagcggcacatccggcaataccacatcaacatcaacttcactttcgtccact
ggttctggtgtgaatatgttgtttgttggtctcggagacggtacactgatttcgtttgcg
gttgtcgaacggggtgcatcaattttcgtgcagtcaaagaaagaagtctgtttaggaacg
cagcgaatcgatctcgttccattatgtactgagcagggcggaacgtgcgtcctagcgact
ggagatcgtcctacagttatctacttggcaggtgtcggtggaatttctgcaaaccagttc
aatccaaagctatgctattccaacgtcaacctctcagccggtgacgacgaggaggaagac
gatgtcagccgacctccttcgcagcaaagtattgtggtcaatgttgcgacaccattctcg
tcatcactattgttcgattcggcaactggcggaagtcaacgctattcgttgtgcgtggcg
gacgattcgtttctgcgtatggggatcattgacgacattcaaaagcttcacgtcacaact
tgtcgactaggaatggctccctgtcgaatcgttcattgtgccgacggtcgattgttcgcc
gtaggctgtatcgaaagcggtatcaagcaattcagtttgggtggggacgaggcgaacatg
ggcaactgcattcgttttatggatgacgccaatttcgatgatatccatcgagtggatctc
gaaccatttgaaatgatattgtcaatggtgtacgccacgctacggattccgtctgacgga
gatcaatcggaccaacccgtacataggccgtttttgctggttggtaccgcatacgcaatg
ccagacgaagatgagccaagtcgtggtcgcattcttgtctattcttgccaagcggacgag
gcttccgggacgccaaccagcacacgtgcagtgcgacagattacggaaatgtcgacgcaa
ggcggtgtctacagtatttgccagttctacgacggcaattttttgtgtactgtcaattcc
aaaacacatgttgtgcagattgttgcggattgtggtgtcttgcggctagagtacgtggga
atcgggcaccatggacacatagtgagcttgtttgtgaaaagccgagcgaaacctctggca
attgtgggagacttgatgaggtcagttagcttaatgcagtactaccctcaacatgaaact
cttgaggaagttgcgcgagacttcaacccaaactggacgaccgcggtggaaatgcttacg
gacgacgtgtacattggtgccgaaaactggaacaatcttttctgccttcgacgcaacaag
gctgctaccagtgaagagattcgctgtcgattggataacattggagagtttcacctagga
gaaatgtgcaacaaatttatgagtggcagtcttgtcatgccggtctcttccaactccacc
acatcaagccggagggccactttgttcggaacagtagaaggctctctaggggttatcctg
ggcttggacgggagaactgctgctttctttatcacgctggaaagagcaattgccaaaacg
attcagcctgtgggcggtttctctcatcagctatacagatcttgccaagctgagctccgt
gttcatcccgcgcatggttttgttgatggcgatctagttgagacatttttggatttggat
cgaaggacgatggaggcagttgtggctgaaatgaatcgggacggcgggtgggaagtggat
gatttcgcgaactcaaggtctgacgagaacaatgatagttccaaggacaccgacaggatc
aacctcgaagagcgatccgagctgtctattgacgacgttttagcgatggtagaggagatg
acaatgcttcattga
DBGET
integrated database retrieval system
