Phaeodactylum tricornutum: PHATRDRAFT_33072
Help
Entry
PHATRDRAFT_33072 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATRDRAFT_33072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_33072
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHATRDRAFT_33072
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PHATRDRAFT_33072
mRNA degradation factors
3'-5' decay
Ski complex
PHATRDRAFT_33072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
MTR4_beta-barrel
Itf52_C
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
7197053
NCBI-ProteinID:
XP_002177837
JGI:
33072
UniProt:
B7FTF8
LinkDB
All DBs
Position
2:<1451461..>1454903
Genome browser
AA seq
872 aa
AA seq
DB search
MTFPFILDGFQQQAVVRLERSESVFVAAHTSAGKTVVAEYAVALAKQRGTRCVYTSPIKA
LSNQKFRDFSLKFGAENIGLITGDLQVNADDSTCLIMTTEILRSMLYRGADLVRDIEFVV
FDEVHYVNDTERGVVWEEVIIMLPSYVNLIFLSATTPNTLEFSDWIGRTKRKPVFVIKTD
YRPVPLSFNLWAGLKLHTVMEGRDGFLERGFASAANALLPAMAWQAQGTKQNWMSLVRFL
DRENMTPTVVFSFSKKKCEEISIMLQSLDLNTAKERGAVQGFTLQTVARLSKNDSNLPQV
VMVCEMVQRGIGIHHGGLLPILKEMVEILFAKSLVKILFATETFAMGVNMPARSVVFNSV
RKHDGKQFRQLEPGEITQMAGRAGRRGLDKVGTVIICCFGETPPPQPMLKQMLTGSSTRL
NSRFRLTYNMILNLLRVEEMSVESMIKRSFSEFATQRALTTNDFPQLLTRGIRALENRIG
SEDVEEYFSTCSEILSITERLLTNVRDTEAASFEGILQKGRIVLISACRELGAILLVSSQ
KCNVDTTSILREEHSSPAQATENPFAGMKTRGKKGASMDNKRGSGTAKADEEVEKVLDSL
MEAERAELYLRDFLKRGDSVLRSRQLFGRLEAELDQMRNYEIHRHPSLESMYSTVERKES
LRSKVNTLRHLLSNESLQLFPDFLQRKAVLRKLGYIDEKETVSIKGRVACETNTCEELIV
TELVFEGLLNELDPEEIVAVLSALVFQEKGKETSLSVELPERLITIALNLGRIQKDVGLD
IDPAEYSESSLNFGLVHVVYEWALGVPFKSICDLTDVQEGSIVRSITRLDELCREVRNCA
RVVGNPTLYRKLEAASMTIKRDIVFASSLYVS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgacatttccatttattcttgacggttttcaacaacaagccgttgttcgattagaacga
tctgagtctgtttttgttgccgctcatacttcggcggggaaaaccgttgttgcggaatac
gccgtggccttggcgaagcagcgtgggacgcgctgtgtatacacgtctccaatcaaagcc
ttaagtaaccaaaagtttcgcgacttctcgttgaagttcggtgcggagaatattggtttg
attactggagatctacaggtcaacgcagacgactcaacctgtttgatcatgacgactgaa
attttgcggtctatgctttatcgaggggccgatttagttcgcgacattgagttcgtggtt
ttcgacgaagtacattatgtcaatgataccgagcgaggagttgtttgggaggaagtaatt
ataatgttgccctcttacgtgaacttgattttcttgtcggcgactacaccaaataccttg
gaattctcagattggattggacggactaaacgaaagccggtgttcgttattaagacagac
taccgaccggttcccttatcgtttaatttgtgggcaggtcttaagcttcataccgtaatg
gagggtcgagatggatttcttgagagaggatttgcgtcagccgcgaacgcgctcctccct
gcgatggcatggcaagcccagggaaccaagcaaaactggatgtcccttgtgcgctttttg
gacagagaaaatatgactccaaccgttgtgttctcgttttcgaagaaaaagtgtgaggag
atttctatcatgttgcaatcgcttgatctaaatacggctaaggaacgaggtgctgtccaa
ggttttacgctgcagacggtggctcgtctctccaagaatgattcgaatctacctcaggta
gtaatggtatgtgagatggtgcaacggggaatcggtattcaccatgggggtcttctcccg
atactgaaagaaatggtcgagatattgtttgccaaatcactggtgaaaattctttttgca
actgagacattcgccatgggtgtgaatatgcctgcacgcagtgtagttttcaacagtgtt
cggaagcatgacggcaagcagtttcgtcaactcgagcctggagaaataacgcaaatggcc
ggtcgcgccgggcgtcgtggactggacaaagtaggcactgtgattatatgctgtttcggc
gaaacacctccaccgcaacctatgttaaagcaaatgttgactgggtcatcgacaagatta
aacagtcgctttcgactcacatacaacatgattttgaacctactaagggtcgaggaaatg
agcgttgaatcaatgatcaaacggtcattctccgagtttgctacacaacgagccctgact
acgaacgactttccccagttgctgactcgagggatcagagcactagagaatcgtattggg
tctgaggacgtggaagagtatttctcgacttgcagcgaaatcctttcaataaccgaacgt
ctactgacaaatgtgagagacacggaggcagcatcgttcgaaggcattctacaaaagggt
agaatcgttttgatttcggcctgtcgagagcttggtgcgatccttctggtctcttcgcag
aagtgtaatgttgacacgacttctattctaagggaagagcacagctctccagctcaagca
acagagaatccttttgctggaatgaaaacgcggggcaaaaagggggcctcaatggacaac
aaaaggggatctggcactgcaaaagcagatgaagaagtcgagaaagtcctagactcgtta
atggaagcggaaagagcagaactttacctccgtgactttttgaaacggggggacagtgtc
ttacgatctcgacagctgttcggccgacttgaagctgaattggatcaaatgcggaactac
gaaatccatcgccatcccagcctcgaatcgatgtactctactgtggaacgaaaagagagt
ttaagaagcaaggtgaatactttgcgccatcttttgtcgaatgagtcgttacaacttttc
ccagatttccttcagcgaaaagcagtacttcgcaaacttggatatatcgacgagaaagaa
accgtgtccatcaaaggacgcgtcgcttgtgaaacaaacacctgcgaggagctgattgtg
actgagctggtttttgaagggctcttgaacgaactcgatccagaagagattgtcgccgtc
cttagtgctctagtttttcaggagaaaggcaaggaaacttcattgagcgtcgaacttcct
gaaagattaattacaatagcattaaatctgggccgtattcaaaaggatgtgggcttagac
atagatcctgctgaatacagcgaaagctcgctcaacttcggtctcgttcatgtcgtctac
gaatgggcactcggagtcccttttaaaagcatttgcgacttgactgacgttcaagaaggt
tctattgttcgaagcattacccgcttggacgagctttgccgtgaagtccgaaattgtgca
cgagtggttggaaatcctactctgtacagaaaactggaagccgcaagcatgacaatcaag
cgcgacattgtgtttgcttcgagtctatatgtgagctag
DBGET
integrated database retrieval system
