Phaeodactylum tricornutum: PHATRDRAFT_34712
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Entry
PHATRDRAFT_34712 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_34712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_34712
Spliceosome [BR:
pti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
PHATRDRAFT_34712
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
7200179
NCBI-ProteinID:
XP_002179155
JGI:
34712
UniProt:
B7FWG8
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Position
6:201683..203671
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AA seq
662 aa
AA seq
DB search
MTLDSINESGSSNNTTNKNNHTNTNDGPAESGQNRRRRRRWGEVPPVPATSLTTTTTTTT
NAPSPPELDPKAKVLAMQESIRARLAAAKAKQELQKTIAATPIATNEAASGASKRPLAYE
PPNGLPKATKRAKTYNIDLSVTAPTFQKGTKAVGDATTTGTSPAPAVPLQKVNNPYLAHL
EEHDTEAVVDDRLDRASKPRRPHKPLHFIEPGTFAALAERKREKAALAQASGYVSGRKTG
HTIVSANLASVYGPQHGRDEEEDETLKPRWDAHPDTKMPLTMEWWDTELLPQKLKKQVAA
AEAKELNSQAQAQLVNLDDTDTGTKAVTSVAADGNFEALQKACFDQAALSYSKTAALVQH
IVPIKPPNAPSGPAKQAVLHLTRKELKRQRKLRRQEKQREMQDLQAAGLVPAPEPRLTLS
NFIRVLGDQAFLDPSHMEQKVAQQMQARQQAHLKRNETNKLTKEQRAAKRTKKLQEDTSQ
GVTVALFLVQDLSHPLLRANLDLNAQQNNISGAVIECQDPSLGCVICEGGPKAIKRMTRL
MLVRMKWRGPDDGEELEYESDEEDEAGEYSTHKYNPDNKCELVWQGMAVKRVFNGFLFQS
VETSNQARKILKAKGVSHYWDQLLICKSGRGEVFRLKLGDDSEDEEGNPFEKLDEDIVMA
DE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgacactcgattcgataaacgagagcggtagcagtaacaacacaaccaacaaaaacaat
catacgaatacaaacgatggtcccgcggaaagtggccagaaccggcgacggagacgtcgc
tggggggaagttccgccggttcccgccacctcccttacaacaacaacaacaacaacaacg
aacgctccgtccccaccggaactggatcccaaagccaaagtgctggcaatgcaagaaagt
attcgggcccggttagcggctgccaaagccaaacaagagttacaaaaaaccattgcggca
acacccattgcgacgaatgaagcagcatcgggtgcgagcaaacggcctctggcgtacgaa
cccccaaacggtctgccgaaagcaaccaaacgtgccaagacgtacaatattgacttgtcg
gtgacggcacccactttccaaaaaggtacaaaagcagtcggcgacgcgacgactaccggt
accagtcccgcacccgcggtgccgctccaaaaggtgaacaacccgtacttggctcatttg
gaagagcacgacaccgaagccgtcgtggacgatcgcttggatcgagcctcaaaaccgcgg
cggccgcacaaacccttgcattttatcgaaccgggcacctttgccgcgctggccgagcgc
aaacgcgaaaaagccgcactcgcgcaggcgagtgggtacgtgtcggggcgcaagacgggg
cacacgattgtttccgccaacctggcgtccgtgtacggtccgcaacacgggagagatgaa
gaggaagacgagacactcaaaccgcggtgggacgcacatccggataccaaaatgcctttg
acgatggaatggtgggatacggaattgttgccccagaaattgaaaaagcaagtggcggcc
gcggaagcaaaagaactcaatagtcaagctcaagcgcagttggtgaatctagacgacacg
gacactggtaccaaggcagtgaccagtgttgctgcagacggaaatttcgaggccttgcaa
aaagcgtgctttgatcaagccgcgctatcctacagcaaaactgcagccttggttcaacac
atcgtgccaatcaaaccaccgaacgcaccgtccggtccggcgaaacaggcggtcttgcat
ttgacacgaaaggaactcaaacgtcaacgaaagctgcgccggcaagagaagcaacgtgag
atgcaagatttgcaagctgctggtctagtacccgcacccgagcctcgcttgaccttgtcc
aattttattcgtgtgctgggtgatcaagcatttttggatccatcgcatatggaacaaaag
gttgctcagcaaatgcaggctcggcaacaagcccatttaaaacggaatgaaaccaacaaa
ttgacgaaagaacagcgggccgccaagcgcaccaaaaaactacaggaagacacttcgcaa
ggggtcactgtcgcgctgtttctagtgcaggacttgtcccatcccttgttgcgcgcgaac
ctggatttgaacgcccagcaaaacaacatttctggagcagtaatcgaatgccaagatcct
tcactaggctgtgtgatttgcgaaggcggtcccaaagcaatcaaacgcatgacgcgactc
atgttggtacggatgaaatggcggggccctgatgacggagaagaattggagtacgaaagc
gatgaagaggatgaagctggtgagtattctacacacaaatacaatcctgataacaagtgc
gaattggtctggcaaggaatggcggtcaagcgagtctttaatggctttctctttcagtcg
gtcgaaacttccaatcaagcgcgcaaaattctcaaagccaaaggggtatctcactattgg
gatcaacttttgatatgcaaaagtggtcgcggcgaagtctttcgcttgaagctaggcgat
gacagtgaagacgaagaaggcaacccgtttgagaagctggacgaagacattgtcatggct
gacgagtag
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