Phaeodactylum tricornutum: PHATRDRAFT_35171
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Entry
PHATRDRAFT_35171 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K15216
RNA polymerase I-specific transcription initiation factor RRN3
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_35171
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
PHATRDRAFT_35171
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRN3
Motif
Other DBs
NCBI-GeneID:
7200564
NCBI-ProteinID:
XP_002179815
JGI:
35171
UniProt:
B7FXS2
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Position
7:complement(<225792..>228542)
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AA seq
723 aa
AA seq
DB search
MKYFLFGARLGRTSSFLAKSEIYESLPLTFGTLVGKPFRCNMSKIDDTTQERFTPYCASI
RRNPEKSVGEQLVLPKCKMPTRAEIEPVELFVASAVQQQYESGDGTNPTENYSALIDPFL
VRKDLAMIHRILLALRTSGHGATLNRLASSARHARLIHHIIRLNPFRLPCPAESQSSMDD
YVDYDIADAQLHLMMALVSANSVFMIPILTSLWSMLSFESVDAPFEQTQRLHAAMATIVR
LCPKAKKVVRYVPAMEAQVLEFLIEKSLEMDVEIKIDEGGEAEIDTDYSVFQLDMDSDAH
SLRRRQLNEVNVQESIVNDMAEKLDSLMFLLLEYVEQSCAGNADLIREKYRILAQFFESS
IIITHKSKFVQFLIVHVCGLENKALESASCQNDQSPAILYRKFASSLIHVIVDPYRATVT
RQAAACYLASFVSRASFVCEETCCESVCALLRWGEAYMQSLDSLSVHAADAREQCNFHSL
FYTISQAAFYIMCFRGVEAIEFYRKSTKPSSDGFAQPEHLDISPERWTSLCSHPLQPLRY
CLESVRNEFLELSKFCHLINAIVYCQLAQDENNVVKRNKRQVTPIATPATLEKERLSGGV
GGLGKGTNPLDSFFPFDPYLLRKSHVFVDPFYNHWNGSITERFMKDEDSVLNPSDEQHVD
DDESDNKKGSIADGVSHDDFDNEIVTKSFQPMSLGSEFGPASASSRSTVSTESSSNGSEH
GKR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatttcctattcggggctcgtctaggccgcacttcctcttttctggccaaatcc
gagatttatgaatcgttgcctttaacatttggcaccttagttggcaaaccgttccgctgc
aacatgtccaaaatagatgatacaacccaagagcggtttaccccatactgtgcatcgata
aggaggaatcctgaaaaatccgttggggagcagcttgttctgccaaaatgcaagatgcct
actcgtgccgaaatcgaaccggtcgagttgtttgtggccagtgcagtgcaacaacagtac
gaatctggggatggtaccaatccaactgagaactacagcgcattaattgatccttttcta
gtaagaaaagatctcgctatgatccaccgcattcttttggctctgcgtacttcggggcat
ggcgcaacattgaatcgtctagcttcttcggcgcggcatgcccgacttattcaccatatt
attcgattgaatccctttcgactaccgtgtcccgcagaatcgcaatcttcaatggacgac
tatgtggactatgatatcgctgatgcgcaactgcatcttatgatggctttggtgtcggca
aactcagtttttatgatacccatccttacctcgctttggtcaatgttatcgtttgaaagt
gttgacgcacccttcgaacaaacgcaacggcttcatgctgcaatggccacaattgttcga
ctttgcccaaaggcaaaaaaggtggttagatatgtccccgccatggaagcacaggttctc
gagtttttgattgagaaaagtttagaaatggacgtcgagataaaaattgacgaaggtggg
gaagctgaaatcgacacggactacagtgtttttcaattggacatggactccgatgcacat
tcattgcgacggaggcagctaaatgaagtgaatgtacaggaaagtatcgtgaatgatatg
gccgaaaagctcgactccttgatgtttcttttgcttgagtatgtcgagcaaagctgtgct
ggcaatgcagatctcattcgtgagaaatatcgcattcttgcccaattttttgaatcctcc
attatcattacgcacaagtctaagtttgtacagtttttgatagtgcacgtttgtggcctg
gaaaacaaggcgctggaatcagcatcttgccaaaacgaccagtccccagcgatactctat
cgaaagtttgcgagcagtcttattcatgtgattgtagatccctaccgtgcgacggttact
cgacaagcagctgcttgttatttggcgtcgtttgtcagtcgagcttcgtttgtttgcgaa
gaaacttgctgtgaatcggtctgtgctcttttgcgatggggtgaagcatatatgcagtca
ttggactcgctttcggttcacgcagctgatgcacgagagcaatgcaattttcactcattg
ttttacacgattagtcaagcagcattttacatcatgtgttttcgaggggtggaagctatt
gagttttatcgaaaatctacgaaaccatcgagcgatggttttgcccaaccagagcatctc
gatatttcacctgagcgatggacgagtctctgctcgcatccactacagccccttcgttac
tgcttggaaagcgtgcgtaatgagttcctggagttgtccaagttttgccacctcatcaat
gcaattgtctattgtcaactagcacaagacgagaacaatgttgtcaagcgcaataaaagg
caggtaactcctatcgcaacaccggctacattggaaaaggaacgccttagtggcggcgtt
ggaggtttgggaaaaggtaccaatcctcttgattctttctttccatttgacccgtatttg
ctgcggaaatcacatgttttcgtggacccattttataatcattggaacggttcaatcacg
gagcggtttatgaaagacgaagacagcgtcttgaatccctcggatgagcaacatgtggat
gacgacgaatctgacaacaaaaagggtagcattgcggatggtgtgagccatgatgatttc
gataatgaaattgtgacgaaatcgtttcagcctatgagtcttggctcagaattcgggcca
gcaagcgcttcgagtagatcaactgtttccactgaaagctcatcaaacggctccgagcat
ggaaaacggtag
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