Phaeodactylum tricornutum: PHATRDRAFT_35311
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Entry
PHATRDRAFT_35311 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14312
nuclear pore complex protein Nup155
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PHATRDRAFT_35311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_35311
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
PHATRDRAFT_35311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
His_Phos_1
Motif
Other DBs
NCBI-GeneID:
7200364
NCBI-ProteinID:
XP_002179681
JGI:
35311
UniProt:
B7FY57
LinkDB
All DBs
Position
7:602732..608497
Genome browser
AA seq
1849 aa
AA seq
DB search
MVSSQSNRPPGHVPYAPPQQTLDAYWRDDFRPLHAAGRAVLRALRDDEAAPDADLYRRVA
SSGSPGAAGYYHAGGGGVPTSPRPTTTSAYAPTHGAVAPPVAALRHLRSVPLSPILRQQL
QKTKRGSLMGLLREANLAWMSSDDKLFLWSTRAGANGSSFCSFVTPSGQSIVSVGIAPPK
KGVFKSNVQWCLIVTTLDEILLCALARTTETDASGAASFDHGPDRALQLVPTSFTMPTDM
VRMLSVVGTPTGRIFLGGEDGCVYEVTYEIGPLSDPQQLPLHDRLELFYDGDLDLPSVVE
DHHETAGTSFLARGKRLWFSDDRNHQTTARPRKCRKLNRSSNVSAVANALLPDFLLQGTS
ALLGGKNATGGGKIVQMVVDAERQCLYTLASNGWIGAFDLAKNDALPLTAAADVAKTARL
YLEAVSRGQMLPPSSHQRSVAKISFPGGGSAAQAGVGGMEGARTILKLAEADAPRRARQD
TTGGILLPRSIHVITRRESSRLTLVAVTEGGLRLYLSSLSSQVLASGPVDGFGPIRPLAP
STRLTLCHVRAPPPADMKASQDNGAVNLNINGSVAPKIARDKIPRVDASFYSQGVFVVAM
EPPLSSNELAGRQVGDQILATCPDAIARLPETNDTNGIRELQALSTVSLSSQSSQQLVAP
GGICETFSVPTTSSYGETARNVDAMLPGGLVWDIAPITDETSDLLLMLSRSQTPSDSELD
LGIPPTFFPPSKIRADVSTSKEIQQATKGTMVHSNSVASVALTVATTAVWNLMLSRPLRY
GITYDTSSPLPSLGKSQGPEYRLSKRNASQGFSATASERSGRYNISPSATSSATSIPRSA
RLRSWLLQPPVAPLNQFATQHLESGREFVVLNVGGLHFFGFKSLMSSLVSVLMAAGENIV
HDSSITSFFSSYGYKEGCAMCLAIAIGSGPTPQETGVSEQLRRRACEAALARAFVPKLVP
HADPNLNTSSSIGSMPVSKDALVPPGYDFKPSALSEGLTLLFARLVRPMWHKPGVVITEG
RSVKSTWSMGKGTRWTPAKVEVLFDPDGLERIKTPLRNLLVLVRNVFSRAIKTVPGKQQN
QDSSMDIDDSEGHHQYLTQALEYQSHLRSGNTLVSAQLSPREAEHLAHLIEEKNIHSLYR
LLARTIQLLNLIALLHRVQEMTELREIDWGLLHGLTIAQLVETSEGQDRLENLLNSLVTA
SVSSKSAFVVPSAQTDRIANLFAEQCYLFFSPGSRFAYMGLRLAAEALSSSQLLSSRRLA
LTQQAASNFRSAAGHWYSAPLITGRILHQRRQESHSEIANRALQYGSPLAKAAQSLMQLE
DVASIVEICLLTAANFKSEVPSTSSSSVLTSSTTGSASSLSWEQHLYHKRRESDQAASAQ
ATSSTSSTFAHGTSVTAKDAIDTCYALVFHHMTVLLNTQPELADRMVSASAAASDRQFLA
AFFRQLVDSNHVNTLLRLDSPDLEKWLRERDDPDLLWRYFNVQLKHIEAGQISWDHASNN
NLQLSLTERIESLSRALNSFKAALSDGQRPTHSSLSSEDIAQKVKEVSETLDLARIQSRV
LRAVDSSKPNFPPEVTSEKYSQLCYTLTPVSDLYNDFTSAIPLWDLCLHILHACRHTEMS
TIQKAWTFLICEDVLPCATRDEVAYRFLNSFAADVDLGDGVQLLRGEESMDDGILLFENG
DWANLLRQRIVELGRELYGTGADYVFPLDFLMLALEGLASHCSSISSAGWALAVMADAGV
PYIAILGSYEVLTESQDQVVVGGDSRHRLRNLEATLDLLQHWATSAQSSGLAASNDVETA
LSELRRATASGRLRPKIEALKGKLEASSGTANLLDRLSSIEEAFQYMSQ
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcctcccaatcgaaccgaccaccgggacacgttccgtacgcgccgccacagcag
acgctcgacgcgtactggcgggacgactttcgtcccttgcacgccgcgggacgcgccgtc
ctacgggccttacgggacgacgaagcggcgccagacgcggacttgtaccgacgcgtggcg
tcgagtgggagtccgggagcagcgggctactaccacgccggcggcggtggcgtgccgacg
tcgccccgtcccacgacaacctccgcgtacgcaccgacgcacggagccgtcgctccaccc
gtcgcggctctccggcacttgcgctccgtgcctctgtcaccgatactccgacagcagttg
caaaagacgaaacggggatcgctcatgggattgctccgggaagccaatttggcttggatg
tcttcggatgataagctctttttgtggagcactcgcgccggcgccaatggatcctctttt
tgcagctttgtgactcccagtggacagtcgatcgtgtctgtagggattgctccacccaaa
aagggcgtgtttaaatcaaacgtacaatggtgcttgattgtcaccactttggacgaaatc
ctcttgtgcgccttggctcgtacgacagagactgatgcttctggagccgctagtttcgat
cacggacccgaccgggctctccagctcgtccccacttcctttaccatgcccaccgacatg
gttcgtatgttgtccgtcgtgggaacacccacgggacggatctttctcggtggcgaagac
ggttgtgtttacgaagttacgtacgaaattggaccgctttcggatccgcagcaattgcca
ctccacgatcgactggaactcttttacgacggtgacctggacctcccgtccgttgtagaa
gatcatcacgagacagccgggacgagcttcttggcacggggcaagcgtctgtggttcagc
gatgatcgcaatcaccaaacaacagctcgtccgcgtaagtgtcggaaactcaatcgctct
tccaacgtttcggccgtagcgaatgcgctcctacctgattttctcttacagggaacctcg
gccttattggggggtaaaaacgccacgggcggggggaaaattgtacaaatggtggtcgac
gccgaacggcaatgcctgtacacgctagcatccaacggttggatcggtgcctttgatttg
gccaagaacgatgccctgcccctgacggctgcagcagatgtggccaaaacggcacgactt
tacctggaagccgtctcgcggggtcaaatgctaccaccgtctagtcatcagcgctccgtg
gctaaaattagttttcccggtggcggtagcgcggcccaagctggcgtgggcggcatggaa
ggcgcacgcactattcttaaattggcggaggccgacgcaccgcgacgcgcacgccaagac
acgacgggtggcatcttgctaccacgatccattcatgtaattactcgacgggaaagttct
agactgaccctggtggccgtcacagagggagggttgcgactatacctgtcgtctctgtcc
tcgcaagttttggccagtggcccagtggatggattcggtccgataagaccgttggcgccg
tcgactcggttgacgctctgccatgttcgtgcaccacctccagcagatatgaaagcgtca
caggataacggggccgtcaacctgaacatcaacggcagcgttgctccgaaaatcgctcgg
gacaagatacctcgggttgatgcaagtttctatagccagggcgtttttgtggtggccatg
gagccaccgctatcgtccaacgagttggcgggccggcaggttggtgatcaaattctggcc
acctgccctgatgcgatcgcgcgcttgccagaaacgaacgacaccaacggaattcgtgaa
ctacaggccctttcaacagtgtccttaagctcacaatcctctcaacaactagtggcgcca
ggtggtatctgcgaaactttttctgtgcccacaacttcatcctacggcgaaaccgccaga
aatgtcgatgcaatgcttccgggtggactcgtgtgggatattgctcctatcaccgacgaa
accagcgatcttctcttgatgctgagcagatctcagactccgtctgattcagagctcgac
ttgggaatacctccaacattctttcctccttctaagattcgagccgacgtctcgacgtcg
aaggaaatccaacaggctaccaagggtaccatggttcacagcaactctgttgcctccgtc
gcgctgacggtggcgacgaccgctgtttggaatcttatgctttcccgtccacttcgatac
ggtattacatacgacacatcgtcgccgcttccctctctgggaaaaagtcagggccctgag
tacaggctttcgaagagaaatgcatcacagggattcagcgcgacagcaagtgaaagaagc
ggtcgatacaacatatctccctccgctacgtcttcagccacaagtatacctcgttcggct
cggcttcgatcgtggcttttacaaccaccagtggcccctttgaatcaatttgcaacacag
catttagagtcgggaagggagtttgtagtattgaatgtgggtggccttcacttcttcggc
ttcaagtcacttatgtcgagcttggtcagtgtcttgatggccgccggtgaaaatatagtt
catgactcgtctattaccagcttcttttccagctatggatacaaagagggatgcgctatg
tgccttgctattgccattggatctggaccaaccccacaagaaactggcgtcagcgaacag
cttcggcgacgtgcgtgcgaggctgctttagcccgagctttcgttcccaagcttgtgccg
catgctgatcccaatctgaatacgagctcatcgattggaagcatgcctgtctctaaggat
gccctggtaccccccgggtatgactttaagccatcagcactcagcgaaggtctcactctt
ctctttgctcgacttgtacggccaatgtggcacaagccaggtgttgtcattacggagggc
cgctcggtcaaaagtacttggtccatgggtaagggaacccgatggacgccagcaaaagtt
gaagttctgtttgatccagatgggctggaaaggataaagacccctttacgaaaccttttg
gtattggttcgaaatgttttttcgcgggccattaagactgttccaggaaagcagcaaaac
caagatagctccatggatattgacgattccgaggggcatcaccaatatttgactcaggca
ctggaataccagagccatctacgttctggaaacactctagtttcggcgcagctctcgcca
agagaggctgaacatttggctcatttgattgaagaaaagaatattcactcgttgtatcga
ttactcgctcgcacaattcagctgctcaatttgatagctttgcttcatcgtgtgcaggaa
atgacagagcttcgagagatcgactgggggctcctacatggattgacaattgcgcaattg
gttgaaacttccgaagggcaagaccgacttgaaaatttgttgaattctcttgttacagct
tcagtatcaagcaagtctgcgttcgttgtcccttccgcacagacggaccgcatagccaac
ttatttgccgagcaatgttatctatttttctctccaggctctcggtttgcttacatgggc
ctccgtttggcagccgaagcgttatcgtcttcgcaacttctttcttcgagacgtttagct
cttactcagcaagctgcctcaaattttcggagcgcagcaggtcattggtacagtgcacct
ctcataactggcagaatccttcatcaacggagacaggagtctcatagcgagatcgccaat
cgcgccttacagtatgggagtccgctcgcgaaagctgcacagtcccttatgcagctcgaa
gatgttgcgagtattgttgagatatgtttgcttacagcagcaaacttcaaaagtgaagtc
ccgtctaccagctcttcgtctgtactaacgagctcgacaactgggtctgcttcctctctc
tcttgggagcagcatctttatcacaagaggcgcgaatcggaccaggctgcttctgcgcaa
gctacatcttccacgtcgtcaacatttgctcacggtacttccgtcactgcaaaagatgca
atcgatacctgttatgctctagttttccaccatatgacagttttgctgaatactcaacct
gaacttgccgaccgtatggtatcagctagcgcagctgcttcggatcgtcagtttcttgct
gcattttttagacagttggtcgatagcaaccatgtaaataccttactacgcctcgatagc
cccgatctcgagaagtggctacgcgagcgggacgatccagatctgctctggcgatacttt
aatgttcaattgaagcatatagaagccggccaaatctcgtgggatcatgccagcaacaac
aaccttcagctttctctaacagaaagaattgagagtctttcgcgtgctttaaattcgttc
aaggcggctttgtctgacggccaacgacccacacattcctctttatcatccgaagatatc
gcgcaaaaggtcaaggaagtgagcgagacacttgatctcgctcgcatccagagccgtgtt
cttcgggccgtagattcctcgaagccaaattttccgcctgaggtgacatccgagaaatac
agtcaattatgctacacattgacacccgtctcggacttgtacaatgattttacatccgcg
attccactttgggatctatgtttgcatatccttcatgcatgccgtcacacggaaatgagc
acaatccaaaaggcttggacttttttgatatgcgaagatgtcttgccgtgtgcaacacga
gacgaagtcgcctatcgctttcttaactcttttgctgccgacgttgacctaggggatggt
gtacagctgttgcgcggcgaagaaagcatggacgacggaatcctgttgtttgaaaatgga
gactgggccaaccttttgagacaacgtatcgtcgaacttgggcgggagctgtacggaact
ggagcagactatgtgttcccactcgattttttgatgcttgctttggaaggcctagcaagc
cattgctcatcgatttcgtcggccgggtgggctttggctgtgatggccgatgctggagtg
ccatacatagcgattttgggctcgtatgaagtgcttactgaatcgcaggaccaagtagtc
gtgggcggcgatagccgacatcgacttcgcaacctagaagcgacattggatttgcttcag
cactgggcgacatctgcacaatctagcggactagcggcaagcaatgatgtcgagacggca
ctttcggagctccgacgggcgacagcatctggtagacttcgtccaaagattgaagcgctt
aagggaaaattggaagcctcatcaggaacggcaaacctgttggatcgtctgtcgtctatt
gaagaggcctttcagtacatgtcccagtaa
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