KEGG   Phaeodactylum tricornutum: PHATRDRAFT_37291
Entry
PHATRDRAFT_37291  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATRDRAFT_37291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_37291
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PHATRDRAFT_37291
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PHATRDRAFT_37291
SSDB
Motif
Pfam: ECR1_N EXOSC1 ECR1_N_2
Other DBs
NCBI-GeneID: 7202053
NCBI-ProteinID: XP_002181414
JGI: 37291
UniProt: B7G2P0
LinkDB
Position
12:complement(<636203..>636949)
AA seq 248 aa
MVTPAEGLGPPVARTSVAPTLRYVLGSTVVPGDRLGTIRQIQPGPGTYVRAGHVYASTTG
TLSVSSSEAAVAATATATSSAKPTTTTTTTSAPEDALVWAIVQARSSQGPASTTVLTVGR
VVLARVVRITRQQAVLEILAADGVTTATATLLHRPEGAIHREDVRDGPSEPIRMQDSFLP
GDLVLARVLSLGDSRRYYLTTAEPELGVLHALSRKSGKPMRPTSWKEMACPETGTTEPRK
CARPREIP
NT seq 747 nt   +upstreamnt  +downstreamnt
atggtgacaccagcagagggattgggtccgcctgttgcaagaacctccgttgcaccaacc
cttcgatacgtactcggtagcaccgtcgttcccggcgatcgactcgggaccatccgacaa
atccaacccggaccgggaacctacgtccgggccggtcacgtctacgccagcacgacaggg
acactctcggtgtcatcgtcagaagcagcagtagcagcgacagccacagcaacctcatca
gccaaaccaaccaccaccaccaccacgacaagtgctccagaggacgctctcgtatgggca
atcgtacaagctcgttcttctcagggtccggcatccaccacggtgcttacggtaggtcgc
gtcgtactggcccgtgtggtacggattacccggcaacaagccgttttagaaatactcgcc
gccgacggcgtgacgacggccaccgcaacgctgctgcatcgaccggaaggggcgattcat
cgggaagacgtgcgtgacggaccgtcggaaccaattcgcatgcaagattccttcttgcct
ggagacttggtactcgcacgagtactctcgcttggcgacagtcgccgctactatttgact
acggcggaaccagagttgggcgtcttgcacgcactctcacggaaaagtgggaaacccatg
cgacccaccagttggaaagaaatggcctgtcccgaaaccggcactaccgaaccacgcaag
tgtgcccggccgcgggaaattccgtaa

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