Phaeodactylum tricornutum: PHATRDRAFT_38493
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Entry
PHATRDRAFT_38493 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K10882
crossover junction endonuclease EME1 [EC:3.1.22.-]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03440
Homologous recombination
pti03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PHATRDRAFT_38493
03460 Fanconi anemia pathway
PHATRDRAFT_38493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_38493
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
PHATRDRAFT_38493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EME1-MUS81_C
ERCC4
UIM
Motif
Other DBs
NCBI-GeneID:
7203470
NCBI-ProteinID:
XP_002182644
JGI:
38493
UniProt:
B7G612
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Position
16:complement(238150..240015)
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AA seq
621 aa
AA seq
DB search
MWSSDDEDLNLALRASQETLIVERNRRQPVLQPDDDSISTDGEQALVVLPPAKRALKSNL
QDTSTFPRLSATGDKPRDAIVLHDDESDCCDDDAANMELSLVARLQRKHQIEFEEAPSAK
KPVTLPQGTNGALEVATVGHSPSPTNTAPPRTELKQQKHTAPKNAPVATSILLNSDDSSD
SDDSIKALKLRLAASSERSRPQCSQDIDCSGSASPSPPARKSTNVSKRKERPAVETKRVQ
EISKRQKEIERERSREEKARCQQLKAAERQRLKVVKQTSVALEKARKQKQRQASDQARGK
FCHKEIAVLIEQDWVQQPVWKEAITDGLVASDDHPYIWHEYATLLGCPTVQWIRKDYLLG
GATDAWQQLRKGNHAGYHHIPLLCVIVEPDIFLKLLHRDNSEDDDYPELENWLKGIQAGW
KGAWSHQQKGTPRIIILLYKVRETLDRLWVKYKRESRGRRVSSSPQPPTAEELHDALIWM
MIDFQVECIHCSSSEQTVHELSKMTRLLSEKPYQKHVTELDCVRKLKPRVDENSTLQERA
EDCWFRQLQQIPRISLTVAREFTQHYPTARSLWIAYQNPALSEEQKRVLCKNCFSQKASH
AKLSTWMYKTMTGNDPNDLLR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtagcgacgacgaagatttaaatcttgccttacgggcctcacaagaaacgctt
atcgtcgaaaggaatcgtcgacaacccgtactccagccagatgatgactccattagtacg
gatggtgagcaagccctggtggttctgccgccagctaagcgtgcactcaagtccaacctg
caagatacatcgacctttccgcggctgtccgctaccggggacaagcctcgagatgcgatc
gtattgcacgacgatgaatccgactgctgcgatgacgatgccgccaacatggaactatcc
ctcgtggcacgactgcaacgcaagcaccaaatagaatttgaggaggcaccatctgctaag
aaacccgttactttgccacaaggtactaacggtgctcttgaagtcgcaacggtaggccac
agtccgtctccaacaaatacagcacctccacgaaccgagttaaagcagcagaaacacaca
gctccaaaaaacgctccggttgctacgtccatcttattaaattcagacgattcgtctgac
tcggatgactctataaaagctttaaaattacgattagctgcatcgtcggagcgctcccgt
ccacagtgctcacaggatatcgactgttccgggtcagcgtccccatctccaccagcgcgc
aaatccactaacgtctccaagcgtaaagaacgtccggcggtcgaaacgaagcgcgtccaa
gagatcagtaagcgccagaaggagattgaaagggagcgttctcgagaagagaaagcccgg
tgtcaacaattgaaggcggctgaacgtcaacggctcaaagtggtaaagcaaacttcggta
gctctagaaaaagctcgcaaacagaaacagcgtcaagcatcggatcaagcacgcggtaaa
ttttgccacaaagaaattgctgttttgattgagcaagattgggtccagcaacctgtctgg
aaggaagcgatcactgacggcttagtggcatcggatgatcacccctacatttggcatgag
tacgccaccttgcttggttgtcccactgtccaatggattcgcaaagattacttactaggc
ggtgctactgacgcttggcagcaacttcgcaaagggaatcacgcaggctatcaccatatc
ccactcctatgtgttattgttgaacctgacattttcttgaagctgttgcatcgagacaac
agcgaagatgacgattatcccgaacttgagaactggttgaaaggaatacaggctggctgg
aaaggagcttggagccatcaacaaaaaggcaccccgcgaattattattctattgtacaag
gtcagagaaacgctggaccgcttgtgggttaaatacaagcgagaaagccgtgggcgtcga
gtgagctcttcaccgcaaccaccaacggccgaagaattgcatgacgcgctaatctggatg
atgattgactttcaagtagagtgcattcattgttcatcgtcagaacagactgtacacgag
ttgagcaagatgactcgcctcttgtcggaaaagccgtatcagaagcacgtaacggagctt
gattgtgttcgcaagctcaaaccacgagtggacgagaattccaccctccaagaacgagct
gaggattgctggtttcgacagttacaacaaatcccacgaataagccttacggtggctcgt
gaatttacgcagcactatccgactgctcgatcgttatggattgcgtaccagaatcccgca
ctttcggaagagcagaaaagggttctctgtaaaaattgcttctcgcagaaggcctcgcac
gccaaactttcaacttggatgtacaagacaatgacgggaaatgaccccaatgatttacta
cgataa
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