Phaeodactylum tricornutum: PHATRDRAFT_42429
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Entry
PHATRDRAFT_42429 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATRDRAFT_42429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_42429
Enzymes [BR:
pti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PHATRDRAFT_42429
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHATRDRAFT_42429
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PHATRDRAFT_42429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
7196618
NCBI-ProteinID:
XP_002176507
JGI:
42429
UniProt:
B7FR95
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All DBs
Position
1:30314..34211
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AA seq
625 aa
AA seq
DB search
MNTKEYLYSWHLSLRADRPVEGCGMRPHAYMYGKKLDEREDKTLPPHSKKMKEPPPQHEF
SYRWFRSPLHEPCAYENCPRRTSFSPHDWSRHALGGTECGLQCVSTQSSLFRCTFCNSTC
FVNAWKTQYSVPKEATRTETHGRTRSQSFGSNDEDVFDDTGSVRSSNGSSPALDTLSSPP
PSTPRGFLSGYSAGKQLNPASGSSMYHSEYDAGDDWVEFSRDQLYMPGPEDVGHKLKIEA
AAYSTDTSELLMSRVVKTDVVLGRAPDPLKRQLVTTKGGGGGGPRFRVITYNVLAEIYAT
QQQYPYCDFWALSWDYRFQNILREIIDASPEVVCLQEIQADHYENHVYVAMADAGFEGVY
KQKTRQSMGLAGKVDGCALFWRRSKFHLVESYSIEFNEVAQRQATQVLGLNPRSEEGVAF
LNRLSKDNVAQLVVLEFIQPSRSNREISQVCIANTHLYSNKDFPDVKLWQTWQLLQELES
FIMSRGTNLPLIICGDFNSTPDTAVYDLLSRQTVHPGHPDVNVTTGDDVPNVLPDAMNIT
HSFQLGSAYQTVLGEEPWTTNFTVNFKGVLDYIWYSAQNLRPLSAAPIPEEKQLTKNGEA
LPSTEYSSDHIMLISDMQIIGNGAR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgaaagaatacctgtattcgtggcatctctcgctgcgagcggaccgtccagtg
gaaggttgtgggatgcgcccgcacgcctacatgtacggcaaaaaattagacgaacgcgaa
gacaaaacgctgcctccgcattccaaaaaaatgaaagagccaccaccgcagcacgaattc
tcctatcgatggttccgcagtcctttgcatgagccttgtgcctacgagaattgtcctcgt
cgaacttcgttctctccacacgattggtccagacatgctttaggtggaacggaatgcgga
ttgcagtgtgtatcgacgcaaagttccttgtttcgatgcacgttttgtaattctacttgc
tttgtgaatgcttggaagactcagtacagtgttccgaaggaggccactcggacggaaact
catggtcggacccgttcacaatcttttggtagtaatgatgaagacgtctttgacgatacg
ggtagtgtacggtcttcgaatggatctagtccagctctcgacaccctcagctcgccacca
ccatcgactccccgtgggttcctcagtggatactcggcgggcaagcagctgaaccccgcc
tctggtagcagtatgtaccactcggaatacgatgctggtgacgattgggtggaattcagt
cgagatcagctttacatgccaggccctgaagatgtcggacacaagctcaaaattgaagct
gcggcgtattcaaccgataccagtgaactacttatgtcacgtgttgtcaaaacagacgtt
gttctaggaagggctcctgacccacttaaaaggcaactagttaccactaagggcggtgga
ggaggtggtcctcgtttccgcgttataacgtacaatgttctcgccgagatttacgcaact
caacagcagtatccttactgcgacttctgggcactttcatgggattatcgattccaaaac
attcttcgcgagatcattgatgcatcgccagaagttgtatgcttgcaagaaattcaagcg
gatcactacgagaatcacgtttacgtggccatggctgacgcgggatttgaaggcgtctat
aagcaaaagacgagacagagtatgggacttgctggaaaagtcgacggatgtgctttgttt
tggagacgttccaaatttcatttggtcgaatcctacagcattgagttcaacgaagttgcg
cagagacaagcgactcaagtgttaggcctcaatccacgaagcgaagaaggtgtggccttt
ttaaaccgtctatcgaaggataacgtggcacagcttgttgttctagaattcatccagcct
agtcgatcgaatcgcgaaatatcgcaagtgtgtattgccaatacgcatttgtatagcaac
aaggacttcccagacgtaaagctgtggcaaacatggcaacttttgcaagagctggaatca
ttcattatgagtcgcggaacgaatcttcctttgattatttgtggagacttcaactcgact
ccagatacagccgtctacgatctactctcgagacagacagtccatcccggccatcctgat
gtaaatgttacgactggcgacgacgttcctaacgttctccctgatgcgatgaatattact
cattcgttccagctgggcagcgcctatcaaacagtattgggagaggagccgtggacgacg
aactttactgtcaattttaagggcgttttagattacatatggtattccgcccagaatttg
cggccgctctcagctgccccgataccagaggaaaagcaattgacaaagaatggggaagct
ttaccttcgacagagtacagttcagatcacatcatgctgatctcagatatgcaaattatt
ggcaatggagcacgataa
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