Phaeodactylum tricornutum: PHATRDRAFT_42758
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Entry
PHATRDRAFT_42758 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K15176
RNA polymerase-associated protein CTR9
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_42758
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
PHATRDRAFT_42758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_12
TPR_14
TPR_16
TPR_8
TPR_7
TPR_6
TPR_11
TPR_10
ANAPC3
TPR_15
PknG_TPR
TPR_9
Motif
Other DBs
NCBI-GeneID:
7196135
NCBI-ProteinID:
XP_002176706
JGI:
42758
UniProt:
B7FPF6
LinkDB
All DBs
Position
1:1007388..1011488
Genome browser
AA seq
1346 aa
AA seq
DB search
MSATPVSPTPVEPNDADDEPVMPSFHIPIRSSIQFPDNDSLHHARFIEIFPEEMRDTPVS
TLLHVLKDESAELSTWADAGWHYMVQKKNRESLTILEEACDTTAATTTTTPSNDVDKTER
VRILAATGIAHLSSNGAADATSGNTAKRSNVLDEARQQADQKFTQAGKIDPFFPMTWIGR
GMLNLWQGKHDQATFFFQTTLKQCGPVLPALLGTAAVSFAQGDYTAAQTAYGQALRKYPH
ASGAASRVGFGLASYALGQVDRAKAAFRRATAIDPENVEAMVGTAILDMASVDVSDKDYA
AKMEEAIRVMSMANLLNHENAMVQNHLANHYFWKWTPVNGTVEVTKGSQLVQMPSQAVPL
EPGERIRIGTKFETTVQDVEDDSNNNTASTFTVTDSWSEGSATGLKVWKKDYDRVIALAK
GAYGSTNVQSMQAESLFFLARVYHVRGETDHALKFYEKACKLAPALTPARFGLAQTLIVK
EDYSAAKKQLQQVLATASNATDALALLGLLEARSGKQVEEGLMHLRKATELDPLNTDLVV
LEAMALQKYENNNVKSLERYKKALLLMERKTTKVSYEIYANCGVLCHELKRHDEALDMYR
RALAVLDEDGFKGAAVFQLADGPERGRIRHVDNAMFNAFVNSNLLVEVLDRHSKTFVKVL
DVLEADVAGILSKGDRVSLGDGFETKVVSWESRDGAIVLELADEYDPMDTDSKKAPLLVV
RENNLLSIPEAITVAFNIARLHEATGRTVAAIEIHKAILKRNPAYVNSYLRLACIAVDCG
SLKEGSEWLKIAASTAPGNPEVLTLVGNLHLSLCDWAPAQSVFDGLLSKKIPNVDAYASL
SLGNIYFANLHVNEDKRYDKHLQYAADYYRRILAKDPANAYAANGIGTVLAEKAEIFKAK
EVFNRVREVSGDSIPDALLNLGHIFLAQKKHPEALQMYTNYMKRTEDGTTPTTAKSRVDD
VVSVLLYIAFAFFDWARHTELANDSSAAPADGRYREAMQHLNLAIGKGSKQDLVLKYNLC
MTKLQAANCVLQKLTRNIPRSVEEVEEALRGLEESFQIVEQIVKDKADGKKVNISSTTLQ
DFVKHCKANILSAQSHLEDERKRAKEAEVEREIRRLAAEEATIKERLRMDQAAMDAHKLQ
EEKDQKAEAKMKQVEELQSNWREEKETKQSEKEKRARGRKDEMTADEVGLVVEDDNHQAT
NGHGLFDDSDDDSEIVDSLPNETKGIGGLEKSTSSTKDLFGDSDDDQSGNDEDRKGTVKP
DATKAAITSMDLFGDSDEDDIEVAYGATKPTSEESKKEPPATSNDLFGDTDEDSDAEPST
NSAKRPNESGIAELDDDGQPNKKARL
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccacaccggtatcccccactccggtggaacctaacgatgccgacgacgaaccc
gttatgccttcgttccatatccccattcgatcatccatccaatttcccgacaacgacagt
ctgcaccatgcgcgattcattgaaatatttccggaagaaatgagagatacccccgtctcg
acactcctgcatgtgttgaaggacgaatcggccgaactgtcgacttgggccgacgccgga
tggcactatatggtacaaaaaaagaaccgcgagagcttgaccattctggaagaagcctgc
gacaccaccgctgctacaacaacaacgacaccaagcaacgacgtggacaagacggaacgc
gtgcgcattctcgccgcgaccgggattgcacacttgtccagtaacggagccgccgatgcc
acttccggcaacaccgccaaacgttccaacgtcctcgatgaagctcgccaacaggccgat
caaaagtttacccaagcgggaaagattgatcccttctttcccatgacctggattggccgc
ggtatgctcaatttgtggcaaggaaaacacgatcaggcgacatttttcttccaaaccacc
ttgaagcaatgtggccccgttttgccggccttgctcggcacggctgccgtgtcttttgct
caaggagactacaccgcggcgcaaacggcgtacggacaagcgctccgaaagtacccccat
gccagtggggccgcctcccgcgtaggattcggactcgcctcctacgcactcggacaagtc
gaccgcgccaaagcagcctttcgacgagccaccgccattgatccagaaaatgtggaagcc
atggtcggtacggccattctcgatatggccagcgtcgacgtgtcggacaaagactacgcc
gccaaaatggaagaagcgatccgcgtcatgtccatggccaatctactcaatcacgaaaac
gccatggtgcagaatcatttggcgaatcactacttttggaaatggactcctgtgaacggc
acggtggaagtgaccaaaggatcgcagttggttcaaatgccgtcgcaagccgtgcccttg
gaaccgggagaacgtatacggatcggaaccaagtttgaaaccaccgttcaagatgttgag
gacgatagtaacaacaacacggcttcgacgtttaccgttaccgacagttggagcgaaggc
tccgcgactggcctcaaggtctggaagaaggactacgatcgcgtaattgccttggcgaaa
ggagcctacggtagtaccaacgttcagtccatgcaggccgaatctctattcttcctcgcg
cgggtctaccatgtgcgaggggaaaccgaccacgccctcaaattttacgaaaaggcctgt
aaactggcgccagccttgaccccggcgcggtttggattggcacaaacattaattgtgaag
gaagactatagcgcagccaagaaacagctgcagcaagtgttggcgacggcgtccaacgcg
acggacgcattggcattgttgggattgctggaagcacggtccggcaagcaagtggaggaa
gggttgatgcatttgcgcaaagcaaccgaacttgatcccctcaataccgatttggtagtg
ttggaagccatggcgttacaaaagtacgaaaataacaacgtcaaatccctcgagcggtac
aagaaagcgttgctgttaatggagcgaaaaaccacgaaagtgtcgtacgagatctacgcc
aattgcggtgtcctatgccacgaactgaagaggcacgacgaagcgctggacatgtaccga
cgtgcgctagctgtcttggacgaggatgggtttaaaggagccgccgtttttcagctagcg
gatggccctgaaagaggaagaattcgacacgtggacaacgccatgtttaacgcatttgtc
aattccaatctcttggtggaagtgcttgatagacacagtaaaaccttcgtcaaagtactg
gatgtactcgaggcggacgttgcgggaatattgtcgaaaggggatcgagtctccttggga
gacggatttgaaaccaaggtagtgagttgggagagcagagacggtgctattgtgctcgag
ctggctgacgaatacgatccaatggatactgactccaagaaggcgcctctcttggttgtt
cgcgagaacaatcttctctcgataccagaagcaatcactgttgctttcaatatagctcgg
ctccacgaagccactgggcggactgtcgcagcgattgagattcacaaagccattctgaag
cgaaatccggcctatgtcaatagctatttacgtctagcatgcattgctgtggactgtgga
tcattgaaagaaggttcagaatggctcaagattgcggctagtactgcacctggtaatcct
gaagtcttgacgctggttggaaatcttcatctttcactttgcgattgggcgccagcacag
tccgtttttgatggccttctttccaagaagatccccaatgttgatgcatacgcttcactc
agtttgggtaacatttatttcgcaaacctgcacgtgaacgaggacaaacggtacgataag
catttacagtatgcagccgactattatcgccgcatcctcgccaaggatccagccaacgcc
tatgcggccaacgggattggcactgtgctagcggaaaaagctgaaatttttaaggccaag
gaagtcttcaatcgcgtccgtgaagtcagtggagacagtattcctgatgccctgttgaat
ctcggccacatttttttggctcagaagaaacatccggaagctctccaaatgtacacgaac
tatatgaagcggacggaagacgggacgacgcctactacggccaagagcagggtggatgac
gtggtcagcgtgttgctgtatatagcttttgccttttttgattgggcccggcataccgaa
ctggccaatgattcgagtgcagcgccagctgacgggagatatagagaagctatgcagcat
ttgaatctggccattggcaaaggcagcaagcaagatctcgtactcaaatacaatctctgc
atgaccaagctgcaggcagccaattgtgttttacaaaaactgacacgtaatatcccccga
tctgtcgaggaagtcgaggaagccttacgaggactggaagaaagttttcagattgtggaa
cagattgtcaaggacaaggccgacggaaaaaaggtcaatatttcctcaacgacgttgcaa
gatttcgtgaaacactgcaaggctaacattttaagtgcacaatctcatttagaagacgaa
cgaaaacgtgccaaggaggccgaagtggagcgtgaaattcgccggctggccgctgaagag
gcgacaatcaaagagagactcagaatggaccaggctgcaatggatgcccacaagctccaa
gaagaaaaggatcaaaaggcagaggccaaaatgaaacaggtagaagagctgcaatctaat
tggcgcgaagagaaggagactaagcaatcagaaaaggaaaagcgggctcgaggccgaaag
gatgaaatgaccgcggacgaagtcgggcttgtggtggaagacgacaatcaccaagcaacc
aatggtcacggtttgttcgatgattccgacgatgacagcgaaatagtcgattctctaccg
aacgaaacgaagggaattggaggtctagaaaagtcgacctcttcaactaaggatttgttt
ggagatagcgatgacgaccagagtggtaatgacgaggacaggaaagggaccgtcaagcca
gacgctaccaaagctgcaatcacgagcatggatttgtttggagatagcgatgaagacgac
atcgaggttgcgtacggagcgaccaagcccacaagcgaggagagcaaaaaagagccgcct
gcaacaagcaatgacttgtttggagacactgatgaagatagcgatgccgaaccgtccaca
aacagtgcaaagagacccaacgaatcagggattgcggaattggatgatgatggacaaccc
aacaagaaagcaaggttgtaa
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