Phaeodactylum tricornutum: PHATRDRAFT_43103
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Entry
PHATRDRAFT_43103 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pti
Phaeodactylum tricornutum
Pathway
pti04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
PHATRDRAFT_43103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pti04131
]
PHATRDRAFT_43103
Membrane trafficking [BR:
pti04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
PHATRDRAFT_43103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
TPR_Vps41
Beta-prop_WDR5
WDR90_beta-prop_4th
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_EML
WDR55
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_Gbeta
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_IFT140_1st
EIF3I
Motif
Other DBs
NCBI-GeneID:
7196879
NCBI-ProteinID:
XP_002177430
JGI:
43103
UniProt:
B7FQM2
LinkDB
All DBs
Position
1:complement(2037327..2042549)
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AA seq
1740 aa
AA seq
DB search
MDLSSILDDSDSSNNDEPDSSIYRSISDTSSRMDLEQILREDEEDNDEVELDSPKSQHGF
GALRWNEQTPLGDGSNSHILSQNSFGRPSQNAEDWALLQVILDEGDDDEISTEDDWLHTS
GSGRVSCPTTDRANVNSIMQSDETSMNSGDESSVTMTLPSSISSTPRMDLPSNESLLVKK
SQRDFPEPVDRVSGHAALQPLPATDLLEHFSRSTARRGISGAQPSALPQPDSTEDQEEEE
ASRRALEHARAYEQKLLRAGHREIISPLMVKRRLKPKIELCSRSARKKRPQLTERFASTS
TPRFNFSGIVEEKEMLLIGASLVQHTTAGSDENYGLPTCLAFNSRFIAIGTQLGIVLVYD
FFEVLRQQLGGGGSEDNWNAQKAGAVTSLDLSTNGDMIISGYTSGCVVLWDAIKGTVLRS
IHDIHPSPITTVRFVANLKAVTVDAGGLVNKVAFVKNILWSTYSTDIDCLLDGTAGQILS
MNVLPPYAMVNPQLRPENLASVLRGMNLIALSSERSSFVVAVDPTVNVLHRWARPPQEDL
NESKVDDHEREVHAHMPCLAWGWALTSGGGNLVMPVLARGWGCCLQLLGVSFPTGDDTTN
VEKGKNAPIHWPAFGLHDEIDAKAPILALEWLSSRSVLYLTLSNELHLIDTVMMTLLERI
DVSNLRTVYAEFSLSRNASQKGDRIASRDNDLEVSVTFQNSVRCSHDRLMILCQEQLKCI
SIVGARRRISCLEADGEWLEALALTLDHYESTVISQEDRQRNPNQAKDFASRRNFVFTKG
EDHEWIAKLLMRYLNLAVENAPDSSANQPWSPGSIDARIDLAQSHFQMLAGVCVDFCVVT
RRLDLLFGPIFRRFQHVGYTDIFLDVLEPYVLNDRLTYIAPEVMNHFVEYCRSHNGIATV
ERCLLHMDCTAMDFDTIISLLMVNEMFTALFFVFNQGLNDFVTPLQMLFEKLFEEADTGK
ALLSRRRNGTPQNRFERYGYKAILYLQTCFRGKTFPVEESIVPDERRGSLKRELLELLMR
KDYNPSPHSMHSGENNVVIGQRAQLYPYMKIFLQVDPRAALDSLSLAFGYAEHLLTVRPL
PWDNTVGITGHCCSEKLQAVMDALAHITLPQFSDFTDNVPLVRPQSAMKIFLDFVSVYMI
AGSVQMDNEITFMVLSRMCDKYVEANDAVHRQRAQKDVMDLLGALPSEAYDPDRVLLLID
NSGIHRAALLLHQQVASSWKPDALDLQLRCLHFQSAIDCYLEDEDFEFRKDVFAYVKKEC
SGSLNSSRTPEEEDPITLRNALRTKLSDLIRLDATLTVQLVVELFSDEFDSVVSSLEGVG
EAQFLLLHTIISGNLSDSDPAACSVLNLTVEHHHMYLKLMASVHPELVYEYLSTHDSYRT
ADALKLCQDCNIADASAYLLERMGNVSSALQLILQTLESRMMGLKRAIRGMGGDAFRNRS
VSASAFGKSGRSSSFETLMTQRKDTESVKRILIVALDVCERNSGTAISRSEHGSQLWFNV
LDRLINAKGFLRLSREQPEHACVMAVVLSDLLRVTMQRMVSSVPLSDLVRKVTSDSSGSQ
LGELREMLDILLGTYSFELDLFKSATRVGRFDIIRIERERNHLQQQGSAVDSVTNIVLEQ
QSAAQLTSLFHNTERRDGLLNIHSNGHSNFMDGSLLPYSQRAASGLGSALTKLRSRRGNF
DTSKSSRLPNISMIRSTERNVSNGRFEQVSYGERLVGLLGEPEHRGRLISFENKESRFKL
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggacttgtcgtcgattttggatgactccgactcttcgaacaatgatgaaccagacagt
tccatatataggagtatttctgacacttcaagtcggatggacttggagcaaatcttgcgc
gaagacgaggaagacaacgatgaagttgagcttgattcgccaaagtctcaacatggcttt
ggcgccctgcgctggaacgaacagacgccgcttggggacggaagcaactcccacatactc
agccaaaacagttttggcagaccttcgcagaatgctgaggattgggcgctgctgcaggtc
attctagatgaaggcgatgacgacgagattagcacggaagatgactggctacacacgtcg
ggctcgggacgcgtctcgtgtcctacgacggatcgagcaaatgtaaattcaataatgcag
tcggacgaaaccagtatgaattctggagacgaaagcagtgtgacaatgacattaccgtcg
agtatttcttccacgccacggatggatttgccatcaaatgagtccttgcttgtcaagaag
tcacaaagggattttcccgaacctgttgatcgtgtttctggccatgcggcgcttcaaccg
ctgcctgcaaccgatttacttgagcacttttcccgaagtacagcccgtcgcggcatttct
ggtgctcaaccctcagcgttaccccaaccagattcgactgaggaccaggaggaagaggaa
gcttcacggcgggccttagagcatgccagagcttacgaacaaaaactactgagggctggc
catcgtgaaattatatcacctttgatggtgaaaaggcgattaaagcccaaaatcgagttg
tgttcgcgctctgcccgaaaaaaacggccacagctaacggagcgcttcgcgtcaacttcc
acgccgcgcttcaacttttctggcatcgtcgaggaaaaagaaatgcttttaattggtgct
tctctggttcagcacaccacagctggatcagacgaaaactatggcctgccaacctgtcta
gctttcaattcgagattcatagctattggaactcagcttggaatcgttctcgtgtacgat
ttctttgaagtcttgcgccaacagttgggaggaggcggctcggaggataattggaatgca
caaaaggccggtgcggttacaagtttagacctgagcactaatggcgatatgattatctct
ggatatacgagtgggtgtgttgtcttatgggatgcgataaaagggactgtgctgcgcagc
atccacgatatacacccatcgccaatcactactgttcgctttgttgcgaatctcaaggcc
gtgacagtagacgctggcggacttgttaacaaagtggcttttgtcaaaaatattctctgg
tcgacgtattcgacggatatagattgtttgctggatgggacggcagggcaaattttatcg
atgaatgtgttaccgccatatgcaatggtaaatcctcagctgcggccggagaatctggcg
tcagtcttacgtgggatgaacttgatagcactttcatcggaacggagctcattcgtcgtc
gctgtcgaccccactgtcaacgttcttcaccgttgggccagaccgccgcaggaagacttg
aatgaaagcaaggtagacgatcacgaacgtgaagtgcatgcgcacatgccttgcttggca
tggggatgggcgcttacttctggtggcggcaacttagttatgccagttttggctcgaggt
tggggctgttgcctccaacttttgggtgtcagctttccgacaggtgacgataccacaaat
gtggagaagggcaagaatgctcctattcactggccagcgttcggactgcatgacgaaatt
gacgctaaagctccaattcttgctttagaatggctaagtagtcgttcagtcttatatttg
acactttcgaacgaacttcacttgattgatactgtaatgatgacgttgctcgaacgaatc
gacgtttcgaatcttcgtacggtgtacgccgaattttccttgagccgtaacgcttcccag
aaaggcgaccgcatagcaagtcgcgacaacgatctggaggtttctgtgacatttcaaaac
agcgttcgttgcagccatgaccggcttatgattctttgtcaagaacagctgaaatgcata
tccattgttggtgcacgccgtcgtatttcttgcttggaagcggatggcgaatggcttgaa
gcactcgcgctcacattagaccattatgagagcactgtaatcagtcaagaagaccgtcag
cgaaatccaaatcaagcgaaagattttgcgagccgtcgtaactttgtcttcacaaaaggt
gaagatcatgaatggattgcaaaacttctgatgcggtacttgaatcttgctgtggagaat
gcaccagattccagtgccaatcaaccatggtctccaggatcaatagatgctagaattgat
ttggcccaaagtcatttccagatgcttgcaggtgtctgcgtggatttttgcgtggttaca
agaagactagaccttctcttcggtccaatcttcagacgtttccagcacgttgggtacaca
gatatctttctggatgttctcgagccgtatgtcctaaatgacaggcttacctacattgca
ccggaagtaatgaatcactttgtcgagtactgtagatcgcacaatggcatcgcaaccgtg
gaaagatgccttctacatatggactgtactgctatggacttcgatacaatcatttctttg
ctaatggtcaacgaaatgtttactgctctcttctttgttttcaatcaaggtttaaacgac
ttcgttactccgcttcaaatgttgttcgagaaattgtttgaggaagctgatacgggcaag
gccctactcagtcgtcggcgaaatggtactccgcagaaccgttttgaacgatatggctat
aaagctatattatacctacaaacatgtttccgtggcaagactttcccggtggaggaatct
attgtgccagacgagcgacgggggtctttgaaacgtgagcttttggagcttttgatgcga
aaagattacaatccatcgccacactccatgcattcgggtgaaaacaatgttgtcatcggg
caacgtgctcaactgtatccttacatgaaaattttcttacaagtcgacccaagggcagcc
ctagactccctgtcccttgcatttggctacgctgaacatttacttactgttcgacctttg
ccttgggataatacagttggtatcactggacattgctgttcagaaaaacttcaagcagtt
atggatgctttggcacatatcactctaccgcagttttcagactttacagataatgttcct
ttggttcgaccacagagtgcaatgaaaatatttctggattttgtttccgtttatatgatt
gcaggatctgtacaaatggacaacgagataacatttatggtcttaagtcgcatgtgcgat
aaatatgtggaagcaaatgacgctgtgcatcggcagcgtgcgcaaaaagatgtgatggat
ctcctaggagctttaccgagtgaagcgtacgatccagatcgtgtgttgttgctcattgac
aacagcggtattcacagagctgcgttacttctgcaccaacaagtcgcatcgtcctggaaa
ccggacgcacttgatctgcaattaaggtgcctccactttcaaagcgcgatcgactgctat
ctcgaagacgaggacttcgaatttcgtaaggacgtctttgcttacgttaaaaaagaatgt
tctggatctcttaatagctcacgtacgccggaggaggaagatccgataactttacgaaat
gcacttcgtacgaaactctccgacctcatccgtcttgacgcgacattgactgtacaactt
gtggtggagctcttttctgatgaatttgattctgtagtttcatctctagaaggtgtggga
gaggcgcaatttctgcttctccacacaatcatttcaggcaatctctcagattctgaccca
gcggcctgttctgttctgaatttgacggtcgagcatcaccacatgtacctgaaactgatg
gcaagcgttcatccggaactcgtgtacgagtacctgtcaactcatgacagctatcgaact
gccgatgcattaaaactttgtcaagactgtaatattgccgatgcatcagcctacctcttg
gagcgaatgggtaatgtttcgagcgctcttcaattgatattacagacgctagagagccgt
atgatgggcttgaaacgggcaatccgtggaatgggcggagatgcattccgaaataggtcg
gtgtctgcttctgccttcgggaaaagtggacgttcttcctcctttgagactttgatgacg
caaaggaaggatacggagagcgtaaaacgcatactcatcgtggcgctcgatgtttgtgaa
aggaattcggggaccgccatatctcgaagtgaacatggatcgcaattgtggttcaatgtt
ctcgaccgtcttattaacgccaaaggctttctacggctttcaagagagcaaccagaacat
gcctgtgtcatggccgttgttcttagcgaccttcttcgcgtgacgatgcaaagaatggtg
tcaagtgttcctttatcggatctggtccgtaaagttacttccgatagttccgggagtcaa
cttggtgagttacgtgaaatgcttgatattctccttggaacgtatagcttcgagctggat
ttgttcaagagtgccaccagagttgggcgatttgatatcatccgaattgagcgagaacgc
aatcacctgcagcaacaaggatccgcggttgattcagtgacaaacatcgttctcgaacaa
cagtcggctgcacagttgacttctcttttccacaatacggaacgacgggacggtttgctt
aacattcattcaaacgggcactccaatttcatggacgggtctttgttaccttactcgcaa
cgagctgccagcggactaggctcggccttgaccaaacttcgctctcgtcgtggcaatttc
gatacgtcgaagtcatcacgattgccgaatataagtatgattcgttcaacagagcgcaac
gtgtcaaacggaagatttgagcaggtttcctacggagagcggcttgttggtcttttaggt
gagccggagcatcgaggacgcttgatatctttcgaaaacaaggagtcccgtttcaaactt
taa
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