Phaeodactylum tricornutum: PHATRDRAFT_43211
Help
Entry
PHATRDRAFT_43211 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12821
pre-mRNA-processing factor 40
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_43211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_43211
Spliceosome [BR:
pti03041
]
Complex A
U1 snRNP components
U1 related factors
PHATRDRAFT_43211
Complex B
PHATRDRAFT_43211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
7196575
NCBI-ProteinID:
XP_002176958
JGI:
43211
UniProt:
B7FR02
LinkDB
All DBs
Position
1:2320951..>2323579
Genome browser
AA seq
826 aa
AA seq
DB search
MSRPPSNFSRFPHGAPQMGGRGPTHFGRGSRERPFMGRGAPPPDRPPFVLGSSGPMRNGP
HPGRGPYGSASGPPMMSGRIPGRGDARGGATYTMHRRPLPGRGPPPPPPQPPQGIRAGPG
PTLGRGGRKEGTYPQPGSFQHWPPGPPNGMGNRIPPPPSRTDPAVRERPLPHPPYPTNHS
VGLSPGPLYSRPNGMLPPPPPPPAIIQHHRETHSTMPVSIIGRAPPPAMPHQHSSHFING
KVGLSPYHRPQPPPPYPPAAASTQQQPQAAPLQSTWNHPSLNSTPRNSHQLPLPTTSPAI
VAPLSEDQAWTEHTAPNGMKYYYNSVTKASAWEKPEALKKAQAATTKPRPWTQYTDAGTG
KTYYSNGITTSWEKPADFEPVDRRTTATATIEEVSSEPPQKKKKPEKKNTNFASKDEAVA
AFKGLLLAKDISPIMKWSDVVKVVSSDSRWENCQDVLTIGERRQSLAEYQTKRANELRTL
ERQERQRSKEAFQQLLAEVLPTVSGFSAWKSRFHEFRDSLAKDDRFHAVADDATRDSLFL
DFCEESRKRDERRKRNKKREAEESFIMFLKEKQEIGKLTFASTWNSFASLLDELEHNDAR
FVASVELSDADRQLHFADFVLELQTSEDDKRRRIRDARRRAEKAQREAFRTMLQHLATEG
KLLPSSRWRSVEELLTTDPSFAPVQEQDRDAPRELFEDFVDEWNELYRRDRALLSRLVNS
KSDNARKLLVTSTMLYDDFVNALLDEAADSPEIYGEVKAIIFHEVPVSSARLYFNELHFR
AKGIARPILRLPHQREEDSSEDEGEIIEDGEAPESVNQLARDASSV
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgacctccgagtaatttctcgcgatttcctcacggtgcgccacagatgggcggt
agaggtcccacgcactttggacgtggatcacgggaaagacccttcatgggtcgaggagcg
ccaccaccggatcgtcctccgttcgtgctgggcagcagtggacctatgaggaacggtcct
cacccggggcgaggtccttacggaagtgccagcgggcctcccatgatgagtgggcgtata
ccggggcgtggggatgcgcgagggggggctacgtacacgatgcaccgaagacccttacca
ggccgcggacccccgccgccgcctccacaaccaccacagggaatccgggctggaccgggg
ccgactttggggagaggagggcggaaggaaggaacgtatccacagccgggttcgttccaa
cactggccaccgggtccacccaatggtatggggaatagaatacctccgccgccgtcgaga
acggatcccgctgtcagggaacggcccttgccgcaccctccgtaccctacgaaccattca
gtgggccttagtccgggccctctgtattcgcgacccaacggaatgttgccaccaccacct
ccaccaccagccattatccaacatcacagagagactcattcaacgatgcctgtatctata
atcggaagagcccctccaccggccatgccccaccagcattcatcgcactttatcaacgga
aaagttgggctttctccctatcaccgcccccagccgccaccaccgtaccctccagctgcg
gcgtctacgcagcaacagccacaagctgctcctcttcaatctacgtggaatcacccatcg
ctgaatagtacgccaagaaatagccatcagctccccctgccaacaacgtcaccggccatt
gttgctccgctttccgaagaccaggcttggaccgaacacacggccccgaacggtatgaag
tactattataactcagtaacaaaagcgagtgcatgggaaaagccagaagctctcaaaaaa
gcgcaggctgctactaccaagccgcgtccttggacacagtacacggatgcaggtacgggc
aagacatattactcgaatggtatcacgaccagttgggaaaagcccgccgacttcgagccg
gtcgatagaaggaccaccgctacagcgacgattgaagaagtttcgtctgaaccaccgcaa
aagaaaaagaagccagaaaagaagaacaccaattttgctagcaaggatgaagctgtagct
gctttcaaaggattgcttcttgcgaaagatatttcgccaattatgaaatggagcgacgtt
gttaaggtggtatcgtcggattcgcgctgggagaattgccaggatgttttgacgatcggc
gaacgaaggcaatctctagcagagtatcagactaagcgagctaacgaactacggacactg
gagcggcaagagcggcagcgttccaaggaagctttccagcaactgttagccgaggttttg
ccgaccgtctccggcttctccgcctggaaatctcgattccacgaatttcgcgattcactg
gcaaaggatgatcgcttccacgccgtagcggatgacgccactcgcgatagtctgtttctc
gacttttgtgaagagtcccgcaagcgagacgaaaggagaaaacgcaacaagaaacgagaa
gcagaggaatcttttatcatgtttttaaaagagaagcaagaaatcggaaagctgacgttt
gcatcgacatggaactcgttcgcttctttgttagacgaattggagcacaacgacgccaga
tttgtcgcatcagtggaactgtccgatgcagatcggcaactgcactttgctgatttcgtt
cttgaacttcagactagtgaagacgacaaaagacgtaggatacgagatgctcgacggcgt
gctgaaaaagcacagcgagaagcatttcgtacgatgttgcagcacctggctactgaggga
aagcttttaccctcatcccgttggcgttcagtggaagagctactgacaactgatccgagc
tttgctccagtgcaggagcaggacagagatgcccctcgcgaattgtttgaagactttgtg
gacgaatggaacgaattgtaccgaagagatcgcgctttgctcagccgtcttgtgaattcc
aagtcggacaatgcaaggaagcttcttgttacgagcacaatgttgtacgatgacttcgta
aacgcactcttggacgaggcagcggactctcctgaaatatacggtgaagtcaaagctata
attttccacgaagttcctgtctcgagcgctcgtctatacttcaatgagctacactttcgc
gcaaagggcatagcgagacctattctacggctaccccaccagcgagaggaggattctagc
gaagacgagggagagattattgaggacggagaggctccagaatccgtaaatcagctggca
cgtgacgcgtcttccgtatga
DBGET
integrated database retrieval system
