Phaeodactylum tricornutum: PHATRDRAFT_43374
Help
Entry
PHATRDRAFT_43374 CDS
T01075
Name
(RefSeq) 9-cis-epoxycarotenoid dioxygenase
Organism
pti
Phaeodactylum tricornutum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPE65
DUF5086
Motif
Other DBs
NCBI-GeneID:
7197119
NCBI-ProteinID:
XP_002177588
JGI:
43374
UniProt:
B7FS16
LinkDB
All DBs
Position
2:277490..279514
Genome browser
AA seq
617 aa
AA seq
DB search
MVLSRLVSWTSVAVWLITQNFSSSGISVMLADAFSPVMLTTSRTDVAFQPTLHATTSPDS
VSVRKIQRERERSVRSYHDTEAWNTLFVAVPERSTPVPYDTSAGGSHANDVAQNFRTARA
APLPSNFPPGCLLRLGPNGAPQNEGFFDGDGMVQCITFPPSTDREHVGMFSCSYVDTRGR
QLEGERQKVFLGTLGAVPRGLPLLFNVLSNMLTFRTLQGQKDTCNTALATHGGRVLALME
QCPPAEIAIGRDGRISTVQANCNLDGAIPFAPITGGSLSAHGRTCPETGERVHVSYSSGN
APYVRVDTFAPDGWNLVRSVGVNVPCATMLHDCAITENYVVVLDFPLTLRTTRFLADQFP
VEYEPSYGARIGLLPRHTTDADDSGTIWFDCAPGVILHLVNAYETNDGKVIVQGLRSEPS
TSQGYLEAFSPSFLYEYELDLVSRRTSREGCLNPYEIVEFPILDESQNGKVAPHVYTIGV
RSIGGPLATHQQPVIGLTLDSVVKFNLVNDTESSTKGDVLGKFVLPDRWFAVSEPTVVAK
TDGTGGEYVLIIATVVPEGSDWKQVEALKPENADELTSHVLVLDGDKLDDGPVWMREMPH
RIPYGLHSLFVPWELMK
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggttctttccagactcgtcagttggacgagtgttgcagtgtggttaattactcagaac
ttctccagttccggtatcagtgtaatgctagcagatgcctttagtcccgtgatgttgacc
accagtcgcacggacgtcgccttccagccgacgctccacgcaacgacgagtcccgactcg
gtttccgtgcgtaagattcagcgcgaacgcgagcgttcggtacgctcgtaccacgatacc
gaggcgtggaatacgttgtttgtggccgttcccgaacgaagcacgcccgtaccgtacgat
accagcgctggtggtagtcatgccaacgacgttgcgcaaaacttccgcaccgccagggct
gccccgttgccgagcaatttcccgccggggtgcttgctgcgtctcggtcccaacggagcc
ccgcagaacgaaggattctttgacggcgacggtatggtacagtgcattacatttcctcca
agcactgaccgtgagcatgtcgggatgttttcgtgctcgtatgttgataccaggggtcgc
cagctagaaggcgaacgccagaaagtctttttggggacacttggtgctgtccctcgtggc
ttgccgttgctcttcaacgtactttccaatatgctaacgttccgtacgttacaaggacag
aaggatacctgtaatacggcgttggcaacgcacgggggccgcgtcctggccttgatggag
cagtgcccgccggccgaaattgccattggccgggacggacgcatatctaccgtgcaagcg
aactgcaatctggacggagccatcccgtttgcgccaattactggaggatcactcagcgcc
cacggaaggacctgtcccgaaactggtgaacgggtacacgtttcttacagtagcggcaat
gctccctatgtgcgggtcgatacgttcgcaccagacggctggaatttggtgcgatcggtt
ggtgtaaatgttccgtgtgcgaccatgttacacgattgtgctattacggaaaattatgta
gtggtgctcgactttccgctcacactccggacgacacggtttctagccgatcagttcccc
gtcgagtacgaaccttcatacggggctcgcataggattgctgccacggcataccactgat
gcagacgattcgggcaccatttggtttgactgtgcaccaggggtgatattgcatctggtc
aatgcatacgaaacgaacgacggcaaagtgattgtgcagggtttgcggtcggaaccaagc
acgtcgcaaggatatttggaggccttttcgcccagctttttatacgagtacgaattggat
cttgtctcgcgacgtacgtcccgggaaggttgcctgaatccgtacgaaattgtcgagttt
cctattcttgacgaatctcagaacggcaaggtagcgcctcacgtgtacaccatcggcgtc
cgatcgatcggtggacccctggcgacgcaccaacaacccgtcattggtttaacactggac
agcgttgtcaagtttaatcttgtcaacgataccgagagtagtacaaagggtgacgtgctg
ggcaagtttgtcttgcccgatcgatggtttgccgtatcggagcctacggtggttgccaaa
acggacggaaccgggggtgagtacgtcttgataattgccacagtcgtgccggagggcagt
gactggaagcaagttgaggcactcaaaccagaaaacgcagatgaattgacttcgcatgta
ttggtgttggatggagacaaattggacgacggaccggtctggatgcgggaaatgccgcat
cgcattccgtacggtttgcattcgttgtttgttccgtgggaactgatgaaataa
DBGET
integrated database retrieval system
