Phaeodactylum tricornutum: PHATRDRAFT_43564
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Entry
PHATRDRAFT_43564 CDS
T01075
Symbol
hRad23
Name
(RefSeq) RAD23
KO
K10839
UV excision repair protein RAD23
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03420
Nucleotide excision repair
pti04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PHATRDRAFT_43564 (hRad23)
09124 Replication and repair
03420 Nucleotide excision repair
PHATRDRAFT_43564 (hRad23)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pti03051
]
PHATRDRAFT_43564 (hRad23)
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_43564 (hRad23)
Proteasome [BR:
pti03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
PHATRDRAFT_43564 (hRad23)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
PHATRDRAFT_43564 (hRad23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
Dsc3_N
PDH_C
UBL_UBAC1
Ubiquitin_5
Rad60-SLD_2
TGF_beta_GS
Motif
Other DBs
NCBI-GeneID:
7197590
NCBI-ProteinID:
XP_002178012
JGI:
43564
UniProt:
B7FSN5
LinkDB
All DBs
Position
2:complement(824814..826431)
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AA seq
434 aa
AA seq
DB search
MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSELSAGTLKLIHSGKVLKDEDSIASA
GIKENDFLVVMVTKAKKPVAAKPAATPTPVPAATPGPPVAAAASIETPAPTAAATPAAPT
RADDVSAEAVANLTSMGFPEAEVKHCLRAAHGNPDIAVEFLTNGIPEGVAEAAAAMNTSA
VTSPSASSESSSGSGQPLQALRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPQLLQEIN
ANQALFLQIMNEPVESSASVSAAPAVSGSSDAPSLGGLDSGAAAMMEGMGNPAQMAQMIQ
GMSPEELNQMAAMMGLSPDQLRQTAQMIGQMPPEQLSQFMMQAMGGGEGPESMGGSQVLR
LTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSMGDGGGAFGFDGSGNGN
GDNGDGGDGDDMYD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgctagtgaaaactctcaaaggagagaaatttgagatccatgcggaagagagc
caaaccgttgctgatgtgaaaggaatcattgaagctaccaaatctgagctttcggcgggt
accttgaaactgattcattccgggaaggttttgaaagatgaagactccatcgcttcggca
ggcatcaaagagaatgatttcttggttgttatggtaacaaaagcaaagaaacccgttgcc
gccaagcctgccgccaccccgactcccgtaccggcggcaactcccggtcctccagtagca
gcagcagcatcgattgaaacaccggcgccgactgcggcagccactcctgctgcacctaca
agagcggatgatgtctcggccgaagctgtcgctaatctcacgtcgatgggattcccggag
gcggaagtgaagcactgccttcgtgcagcgcatggcaatccggatattgcggttgagttc
ctcacgaacggtatcccggaaggtgttgccgaggcagcggccgccatgaacacttcggcc
gtaacatctccttcagcgtcgtccgaatcatcgtctggatcaggacagccgctacaggcc
ttgcggaaccacccccagtttaatgatctgcgtagactcgtacaatccaacccgcagatg
ttgcagcaagtcctgactcaaattggccaacagcagccccagcttctgcaagaaatcaat
gccaaccaagcactctttttgcaaatcatgaacgagccagtggagagctctgcgtctgtt
tcggcggcaccagccgtcagcgggtcctccgatgctccatcgttgggcggactcgattct
ggcgctgcggccatgatggagggtatgggaaatcccgcgcaaatggcacaaatgattcaa
ggcatgagtcctgaagaattgaatcagatggcggcgatgatgggtctgtccccggaccaa
cttcgacagacagcacagatgatagggcaaatgcctccagaacagctttcgcaattcatg
atgcaggctatgggaggtggagagggccccgagtctatgggagggtcgcaggtcttgcga
ttgaccgaggaagaaatggcggctgtagaccgattggcagaaatggggtttgatcgttca
gaagccgcccaagcgtttttggcatgtgacaagaacgaagctctggctgccaatttactg
atggactcaatgggtgatggaggcggagcatttggattcgacggctcgggaaatggcaac
ggggataatggtgatggaggcgatggtgacgatatgtatgattga
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