Phaeodactylum tricornutum: PHATRDRAFT_44981
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Entry
PHATRDRAFT_44981 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PHATRDRAFT_44981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_44981
Enzymes [BR:
pti01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PHATRDRAFT_44981
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PHATRDRAFT_44981
DNA repair and recombination proteins [BR:
pti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PHATRDRAFT_44981
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
7199503
NCBI-ProteinID:
XP_002178868
JGI:
44981
UniProt:
B7FV57
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All DBs
Position
5:882586..>883788
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AA seq
367 aa
AA seq
DB search
MPELPEVEQFRQLLLPLVSSSSPIQISAWKDNPPRVWLSEEQINSLSGKYYCVDILRKGK
QLCIVLQPSKANGQKKEPKKSVYLYLHMGMTGRISSPNRESGWGRQSSKVADIEYPPRYT
YLTFATEHYQAAFSDPRKFGKAVLSDNLDPFGLLAPDALNCNDEKLIRNEIIPGFVEQTR
SIKAILLDQNRVCSGVGNWVADEVLYQIGMHPDQQYLTEEQGSRLFETLQAIVRTAVGCL
NSDTKYPDSWLFGYRWTKKRAGKDAAGRALTFLTSGGRTSAIVASVQKLNKRQGRRNSSE
NSHRNTHVKMTAEMVEEEQNYPKRKAKRIKRTAIVSPLSEKVGESGMKKDFILEEKLTVR
RSSRLRL
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccggaagtagaacaattccgtcaactcctgttgccattggtttcgagt
tccagtcccattcaaatttccgcatggaaagacaatcctcctagagtatggctcagtgaa
gagcaaataaattctttatcgggcaagtactactgtgtggatattttgcgtaaaggcaag
cagctttgcatagttttgcagccgagcaaggccaacggccagaaaaaggaaccgaagaag
tcggtctacctgtatcttcacatgggcatgacggggcggattagcagtcccaaccgcgaa
tctggttgggggcgtcaaagttccaaagtagccgacattgagtaccctccgcgctataca
tacctgactttcgcgacggaacactaccaagctgcgttttcagatcctcgtaaattcggc
aaggccgttctatcggacaatttagatcctttcggtctgctagctccggatgctctgaat
tgcaatgatgagaagttaattcgcaatgaaattattcccggttttgtggaacaaaccaga
agtattaaagcgattttgctcgatcaaaaccgagtgtgctcaggggttggaaattgggtt
gcggacgaagttttgtatcagatcgggatgcatcctgatcagcagtacttaaccgaagaa
cagggctcccgcttgttcgaaacgctgcaggcaatcgttcgaactgcggtaggatgtctg
aattctgataccaaatatccggacagttggctgtttggctatcgatggactaagaaaagg
gccgggaaagatgccgcaggacgcgcccttactttccttacatcgggaggcaggacgtcg
gcaattgtggcgtcagttcaaaagcttaataaacgacaaggaagaagaaacagcagcgag
aatagtcaccgtaatactcatgttaaaatgaccgcggaaatggtggaagaggaacaaaac
tacccaaaaagaaaggctaagcgaatcaagcggactgcgattgtttctcctctttctgaa
aaagttggagaatctggaatgaagaaggacttcatccttgaggagaaattgacagtaaga
cgtagttcacggcttcgtttatag
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