Phaeodactylum tricornutum: PHATRDRAFT_45542
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Entry
PHATRDRAFT_45542 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHATRDRAFT_45542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_45542
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_45542
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PHATRDRAFT_45542
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PHATRDRAFT_45542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
NUFIP1
zf_CCCH_4
zf-CCCH_9
zf-CCCH_4
Torus
zf-CCCH_2
zf-met
Motif
Other DBs
NCBI-GeneID:
7200732
NCBI-ProteinID:
XP_002179857
JGI:
45542
UniProt:
B7FY16
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All DBs
Position
7:complement(502347..503496)
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AA seq
363 aa
AA seq
DB search
MPDHNRKRPTGFFSQQGTSGSSSYKGLPPPPPPPIPGTFHSEQSYFYNYNNVPQLNGLNH
LPSKNLSDLHSHYQDHRSPNPAFHSLEHHSQSTIHRKRPRDDTEKPQWKCSPCKLILESE
GALQAHKESHISCTACNFEGAPKVVKGHFQACHGKFSGAGFKQVTIAVPGCPIQRFKICV
GNRPEDVQRWIAERKKRFPRRLPCPAEDVFDSRELAQSTSMKGGLGSLLEGYGSSSSEEG
AVDESPPGAANAVQSETVEGEIVENESAKLELRHAGNELWDLRKQRPCHHFQRNGRCRNG
RQCPYSHDVAVRGRSLKKSKESKNLLEKLLTNDVKREATLTLQILEYLVDTSFLSKPDRK
NVS
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgccagaccacaaccggaagcggcctactggtttcttctcgcagcaagggacctcaggg
tcttcatcgtataaaggacttccaccacctccaccccctccgataccaggaacattccat
tcagagcaatcttacttttataactacaacaacgttcctcagctaaacggtttgaaccat
ctgccttctaagaacctatccgacttacattcccactatcaagatcataggagtccaaac
cccgcgtttcattctctagagcatcattctcagtcaactattcatcggaaacgtccacgg
gatgatacagagaaaccgcaatggaaatgtagcccatgcaaacttattcttgagtccgag
ggtgctcttcaggcgcacaaagagagccacatatcttgcactgcttgtaatttcgaagga
gctccgaaggtggtgaaaggccattttcaagcttgccacggtaagttctctggcgctggt
ttcaagcaagtaaccatagctgttcctgggtgccccattcagagatttaaaatatgcgtt
ggcaatcgcccagaagatgtacagcgctggatcgcagagaggaaaaaacgatttccacgc
cggctaccatgccctgctgaagatgtatttgactccagagaattggcacagtcaacatca
atgaaaggcggcttaggttccctattggaaggttacggatcgtcatcctcagaagaaggc
gcagtcgacgaaagtcctccgggcgcagcaaatgccgttcaatcggagactgtggaaggc
gaaattgttgagaacgagtctgcgaagctcgagttgcggcacgcaggcaatgagctgtgg
gatctgagaaagcagcgaccttgccatcattttcagcgaaatggtcgatgtagaaatgga
aggcagtgtccatatagccacgatgttgccgttagaggtcggtctctaaaaaaatcaaag
gaatccaagaatttactggaaaagcttcttaccaacgatgtcaagagagaggcgacactt
accttgcaaattctggaatacctagtcgatacaagttttctctcgaagcctgaccgaaaa
aacgttagttag
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