KEGG   Phaeodactylum tricornutum: PHATRDRAFT_45542
Entry
PHATRDRAFT_45542  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PHATRDRAFT_45542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_45542
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_45542
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PHATRDRAFT_45542
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     PHATRDRAFT_45542
SSDB
Motif
Pfam: zf-CCCH NUFIP1 zf_CCCH_4 zf-CCCH_9 zf-CCCH_4 Torus zf-CCCH_2 zf-met
Other DBs
NCBI-GeneID: 7200732
NCBI-ProteinID: XP_002179857
JGI: 45542
UniProt: B7FY16
LinkDB
Position
7:complement(502347..503496)
AA seq 363 aa
MPDHNRKRPTGFFSQQGTSGSSSYKGLPPPPPPPIPGTFHSEQSYFYNYNNVPQLNGLNH
LPSKNLSDLHSHYQDHRSPNPAFHSLEHHSQSTIHRKRPRDDTEKPQWKCSPCKLILESE
GALQAHKESHISCTACNFEGAPKVVKGHFQACHGKFSGAGFKQVTIAVPGCPIQRFKICV
GNRPEDVQRWIAERKKRFPRRLPCPAEDVFDSRELAQSTSMKGGLGSLLEGYGSSSSEEG
AVDESPPGAANAVQSETVEGEIVENESAKLELRHAGNELWDLRKQRPCHHFQRNGRCRNG
RQCPYSHDVAVRGRSLKKSKESKNLLEKLLTNDVKREATLTLQILEYLVDTSFLSKPDRK
NVS
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgccagaccacaaccggaagcggcctactggtttcttctcgcagcaagggacctcaggg
tcttcatcgtataaaggacttccaccacctccaccccctccgataccaggaacattccat
tcagagcaatcttacttttataactacaacaacgttcctcagctaaacggtttgaaccat
ctgccttctaagaacctatccgacttacattcccactatcaagatcataggagtccaaac
cccgcgtttcattctctagagcatcattctcagtcaactattcatcggaaacgtccacgg
gatgatacagagaaaccgcaatggaaatgtagcccatgcaaacttattcttgagtccgag
ggtgctcttcaggcgcacaaagagagccacatatcttgcactgcttgtaatttcgaagga
gctccgaaggtggtgaaaggccattttcaagcttgccacggtaagttctctggcgctggt
ttcaagcaagtaaccatagctgttcctgggtgccccattcagagatttaaaatatgcgtt
ggcaatcgcccagaagatgtacagcgctggatcgcagagaggaaaaaacgatttccacgc
cggctaccatgccctgctgaagatgtatttgactccagagaattggcacagtcaacatca
atgaaaggcggcttaggttccctattggaaggttacggatcgtcatcctcagaagaaggc
gcagtcgacgaaagtcctccgggcgcagcaaatgccgttcaatcggagactgtggaaggc
gaaattgttgagaacgagtctgcgaagctcgagttgcggcacgcaggcaatgagctgtgg
gatctgagaaagcagcgaccttgccatcattttcagcgaaatggtcgatgtagaaatgga
aggcagtgtccatatagccacgatgttgccgttagaggtcggtctctaaaaaaatcaaag
gaatccaagaatttactggaaaagcttcttaccaacgatgtcaagagagaggcgacactt
accttgcaaattctggaatacctagtcgatacaagttttctctcgaagcctgaccgaaaa
aacgttagttag

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