Phaeodactylum tricornutum: PHATRDRAFT_46588
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Entry
PHATRDRAFT_46588 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pti
Phaeodactylum tricornutum
Pathway
pti04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
PHATRDRAFT_46588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pti04131
]
PHATRDRAFT_46588
Membrane trafficking [BR:
pti04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
PHATRDRAFT_46588
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COP-gamma_platf
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
7201862
NCBI-ProteinID:
XP_002180903
JGI:
46588
UniProt:
B7G1R9
LinkDB
All DBs
Position
10:814026..817703
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AA seq
1225 aa
AA seq
DB search
MSIVATWDLQANYSPRSLAVFPAAQGAVVATHNPFDAAAAVPVEGHALAIVYGTERGSVH
YRSFGPPSRTARAGLASSSSRNAASTSSAAHQLQTPLGVAQGSGRRPSANLPRHLFPIDL
SSGSVPGSIVVCLQLGGTAPQSPSVPVFLLLVDDNRGTSGSSQPGAYATYLATLSHGSFH
VLSTQSSLPRMSCVQYSPTTGIVYAAGRHLQTLPWEQWETLVDDTNKHARGRSTMHSKRT
VFSSSSLPSPGVRSGPDGMAFIAKNKVTVVAVGNAVYGVAGHDPRDLPSSEGPVKLLSFA
QSSQVHPIICLDLLDQSLDPDWSLIFLASGRECAVLDVHYGPPDNARISSSEPRHGIVTL
ASPILAAATSLPWVAVLTSDGLISVRSPSCMAIPLRTVEVGTRPNDYFVLRTLLEETQTT
PWIVALSYSGEGRVLQCQPDTEQDLADRLMRHAIDAFGANGFPRSELAEAVNASFTATSY
VGPEASARARVLLKEYLEAVLGLSDFEGGGSSCWPTELSNGEGHHGSLAGGFSGHGVSPS
VVSSASPATLLTGTALLCLVSSQLSPPNSSLANRAAKASAEKMGIVVDGTIAGATVLVCE
LVADKLLREASTALSLLPGSSSAPITRVHRQSQTGSHTDFVEAAIWLLRSCGKHERAIDV
TYEKLQQQGQTGNEASARGYWSQIKYESYTATHLSDLWGAGKEIACDLVLKSPATYRLLE
NNPRLGLSVFTALHPQNQSQWRSMSARDNPLSHPNFPYQVVKLLKSINPAIPYDKDPSLP
LEDQSLPLESGRALVVTYIESAIGIATGRPTEPDQFDTLPSNEDFEERVANFHDELSFQL
LEGVIAERRDDDENGLDTDLGKHYRTKLRRLLRWPIAKIRAETFMDSLPSSFLEEKALVL
GRLGRHEDALRILYIDLDSLELALEYCDHRHEVQKLQQNQARAQHPSTNMYSDEDLLESE
SLERDNAYLPLIRVALESDPKKGASVAIQILALRRSAIDRAAALRLLPVDVPVSAVARPF
LIPALVDSESQVRRLTVVSALLRARYVRLQDELTNAQLKAQANVHVVPQLRNLNLGDPLH
STKAFRARTTTTASATMPNVMIIKHFFPRHLVLQVKVTNEAGYSDRQGRALSDIAFVVAE
SSEEAIQPLLQVPIQTLPPAMTGSAWCVLSASPGRMDGSTAQLTCELCYTVQSVDASLAG
GNGMGTGRTFVEELQDLEVHGAHFS
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgtggcaacgtgggatctgcaggcgaactacagtccccgctcgttggctgtc
tttccggctgcgcaaggcgctgttgttgcgacacacaatccctttgatgccgcggcagcg
gtaccagtggaaggacacgcgctggcgatcgtgtacggaaccgaacgaggatccgtgcac
tatcgctcgttcggaccaccgagccgaaccgcccgagcgggactggcgtcctcttcttcc
agaaacgcagcctccacttcatcagcagcccaccaattgcaaacaccgctaggagtagcg
caaggatcgggacgtcgtcccagtgctaatttgccgcggcatttatttcccattgacttg
tccagcggatccgtgccggggtccatcgtggtatgtttgcaattgggaggaacagctcct
cagtctccgtccgttccggtgtttcttttgctggtggacgacaatcggggaacctcgggt
agtagtcagcccggagcgtacgcaacgtatttggcaacgctctcccacggatcctttcac
gtgctgtccacccaatcgtctttaccacgaatgagttgcgttcagtacagtcccacaacc
ggtatagtatacgcagcgggacgccacctgcaaaccttaccctgggagcagtgggagaca
ttggtagacgacaccaacaaacacgctcgtggacggtcgacgatgcactccaagcgcacg
gtcttttcgtcttcgtcgctaccatccccgggtgttcgtagtggacccgacggtatggcg
ttcattgccaaaaacaaggtaactgtagtggcggtgggcaacgcagtctatggcgtggct
ggccacgacccacgggatttgccgtcgtcggaaggtcccgtcaagttgctttcgttcgca
cagtcttcccaagtacatccgattatttgtttagatctgctggaccaatcactcgatcct
gattggtccttgatcttcctggcaagtggtcgcgagtgtgccgtgcttgatgtacactat
ggaccaccggacaacgcccggatctcctccagtgaacctcgccacgggattgttaccttg
gcctcaccaatcctggccgcggccacttctttgccctgggtagccgttttgacgagtgac
ggcctcattagtgtgcgatctccttcctgcatggcaattcccttgcggacagtggaagtc
gggacacgaccgaacgattatttcgtgctgcgaactctgctggaagaaacgcaaacgacg
ccgtggattgtggccttgagctattcaggagaaggacgtgtcctacagtgtcagccagat
acggaacaagaccttgccgaccggttaatgagacatgctattgacgcctttggcgccaac
ggctttccacgatcggaacttgccgaagccgtcaacgcatctttcactgcaacgtcgtac
gtcgggccagaggcatcggcacgcgcccgtgtgttactgaaggaatacttggaagcggtt
ttggggttgtcagatttcgaaggtggcggttcctcttgttggcccacggaactctccaac
ggggagggtcaccacggctcactcgctggtggtttttcgggtcacggggtttctcctagt
gttgtttcttcggcgtcgccggctaccctcttgacggggacggccctcctgtgtttggtg
tccagtcagctctcgcctcccaattcaagtttggccaaccgagctgccaaagcttcggcc
gagaagatgggcattgtcgtggatgggacgatagcgggcgcaacggtcctggtatgtgag
ttggtggcagacaagctcttgagggaagcctcgactgccctttctctgttgcccgggtcg
tcttcggctcccatcacgcgtgttcatcggcaatcacagactggaagtcatacagacttt
gtcgaagctgcgatttggttgctgcgctcttgcggaaagcacgaacgagcaatcgatgtg
acttacgagaaactgcaacagcaaggccaaacggggaacgaagcgagcgcacgaggctat
tggtcacagatcaagtacgaatcctatacggctactcatttgagcgacctttggggtgca
ggtaaagaaattgcctgcgatctagtgctcaagtctcccgcaacctatcgcctattggaa
aataatcctcgtctaggattgtccgtcttcactgcgttgcacccgcagaatcaaagccag
tggcgatccatgtcggctcgtgacaatcccttgtcgcaccccaactttccctaccaagtc
gtgaagctcctcaagtcaatcaaccctgcaataccgtacgacaaagatccttcgttacct
ctcgaggatcagtctctgcctttagagtcgggacgggcgttggtagtgacgtatatagaa
tccgccatcgggattgctacaggacgaccgaccgagccagaccaattcgacacattacct
tccaacgaagacttcgaggaacgtgttgccaattttcatgacgaattgtcgtttcagctc
ttggagggcgtgattgccgaacgacgagatgatgatgagaatggattggatacagacttg
ggtaaacactatcgtaccaagcttcgacgtctgctacgatggccgatcgccaagattcgc
gcagaaacctttatggactcacttccctcttcatttttggaagaaaaggccttggtcctg
ggtcggctaggacggcacgaagatgctttgcggattctgtacattgatctggacagtctc
gagctggctctcgagtattgtgaccatcgccacgaagttcaaaaattacaacaaaaccaa
gcgcgagctcaacaccccagtacaaacatgtactcggatgaagatttgctcgaatctgag
agtttggagagagacaacgcctatcttccgttgatccgtgtggcactcgaatcggaccct
aagaaaggagctagtgttgcgatacagattctcgccctgcgacgaagtgcaattgaccga
gcagcagccttacgcttgttgccggtagatgttcccgtttcggcggtggcacggcctttt
cttatcccagccttggtggacagcgaatcgcaggttcgaaggttgaccgttgtttccgcg
ttactgcgtgcacgatacgtgcgtctccaagacgagctgacgaacgcacagctaaaagcg
caagcgaatgtacacgtggttcctcagctacgcaatttgaatttgggcgatccgttgcat
tctaccaaggcgtttcgtgctcgcacgaccacaactgccagtgcaaccatgcccaacgtg
atgattatcaaacacttctttcctcgtcacttggtccttcaagtaaaagtgacgaacgag
gcaggctattcggatcgtcaagggcgtgccctttccgacattgcttttgtggtggccgaa
tcttcggaggaggccattcaacctttgttgcaggttccgattcagacgctacctccagca
atgacgggatccgcttggtgcgttttgtcggcttcgccagggcgtatggacggttcgacg
gcacaattaacgtgtgaattgtgctatacggttcaatccgtggacgcctcgttggctgga
ggcaacggaatgggcaccgggcgcacctttgtggaagagctgcaggacttggaagtccac
ggggcacatttttcgtaa
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