Phaeodactylum tricornutum: PHATRDRAFT_47180
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Entry
PHATRDRAFT_47180 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHATRDRAFT_47180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_47180
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_47180
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PHATRDRAFT_47180
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PHATRDRAFT_47180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
7201957
NCBI-ProteinID:
XP_002181430
JGI:
47180
UniProt:
B7G2S0
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All DBs
Position
12:complement(725962..>727999)
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AA seq
610 aa
AA seq
DB search
MCLSRVDRLILFMQKTCLIRIWVFLLTVSQTAAAKATDSASFIVNPSRQFHHRDRRKIID
IMAAHEPIEVEDDEESIDEEQLEDYEDMVEQLGSFPDKVKINSLSMVAEDHADSKKSAMA
IYNTIRKQLLGTSQDKMLPLVYVLDSILKNAKGEYIPIVEDDAANWIPEVHRRLHDSERI
KLQKVWRTWSEFKIFSTDHLRAMGLCFDERVSDKAIGSSAAKVAGISRTKDGSLLLPSSL
RREMQNVLDDMQNDIQNELDKVSLERLAELNPDLLANIKQIAEDAIRHGSGGSNANDTSS
TSSILPAFFAETRPQDVLDQSKAWSELSWNPLEGSHDVVSRLQQLVREGASPDVCYTRTE
VIAMTDYLATASATASLVTAAMERLQNQADRKENKSNLSFPGVDAAVGSSMPVGGFAIDK
SLFSNDGIKQKNAAVVSILYEVGLPFMSSADGRRFRTQLELSKHLDALFKRNQLEKAMAR
TEERGWYATDLVWTFATKEKDLQTTEVKEQSTIGATTTGDEFDPDNSTVPADEMRDRCVI
CGINFKMFFDNEEGMYKYSNCREIEVLNDEVVVNDSELMLVHITCWRGLGSPEVLTMDQA
LQETIVNLKL
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctgtctcgcgtcgatcgattaattctatttatgcaaaaaacttgtctcattcga
atttgggtttttctgctcactgtcagtcaaacagccgctgccaaagccacagactcggct
tcgttcattgtcaacccaagtcgacagtttcaccatcgcgatcgacgcaaaataattgac
atcatggcagctcatgaaccaatagaagtggaagacgacgaggagtcgattgacgaagag
caattagaggattacgaagacatggtggagcagctaggatccttccctgacaaggtcaag
ataaatagtctttccatggttgccgaggatcacgctgattccaaaaaatcggctatggcg
atatacaacacaattcgcaaacagctgcttggtacgagtcaggacaaaatgctcccgttg
gtatacgttttggattccattttgaaaaacgccaagggagagtacattcctattgtagaa
gacgatgccgcgaactggattcctgaggtccatcgtaggctacatgattcggaacgaata
aagcttcaaaaggtctggaggacctggagtgaattcaagattttttcaactgatcacttg
agagccatggggttgtgcttcgatgaacgtgtaagcgataaagcaattggatctagtgca
gcaaaagtagcgggaatcagtcgaacgaaagacgggagtttacttttgccttcttccctc
cggcgggaaatgcagaatgttctggacgacatgcagaacgatattcaaaacgaactcgac
aaagtgtcactagaacgtttagccgaattgaaccctgacttgttggctaatatcaaacaa
attgctgaagatgcgatacggcatggatcgggtggctccaacgcaaacgacacctcaagt
acatcatcgatccttccagcctttttcgccgaaacgcgcccgcaagatgtcctcgaccaa
tccaaagcttggagtgaactgagttggaacccgctagagggctcgcacgacgtcgtatca
agactacaacagctagtacgtgaaggggcgtcgccagatgtttgctatactcggactgaa
gtcattgccatgactgattacctagcgacggcatctgcaaccgcttcattggtgacagcc
gctatggaaagactgcaaaatcaggcagaccgcaaagaaaacaagtcgaatctttcgttt
cctggtgtagacgctgcagttggaagcagtatgccagttggtggctttgcaatagataaa
agcttgttttccaacgacggcatcaaacagaaaaacgcggccgtagtaagcatattatac
gaagtcggtctaccattcatgagctccgctgatggtcgtcgctttcggacgcagctggaa
ctgtccaaacacttggatgcgttgtttaaacggaatcagctagagaaagctatggctcgt
accgaagagcgtggctggtacgccactgacctcgtttggacgtttgcaacgaaagagaaa
gatctgcagactactgaagtaaaagaacaaagtactatcggtgccaccacgaccggagac
gagtttgaccccgataacagcaccgtacctgccgacgagatgcgggatcgatgcgtcatt
tgtggaatcaactttaaaatgtttttcgacaacgaggagggcatgtacaaatatagcaat
tgtcgtgaaatcgaagtgctaaatgatgaagtagtcgtgaacgattccgagctaatgctc
gtacatattacctgctggcgaggtctcggttctcccgaagtcttgacgatggatcaagca
ttacaagaaacaatcgtcaacttaaagttgtaa
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