Phaeodactylum tricornutum: PHATRDRAFT_47388
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Entry
PHATRDRAFT_47388 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
PHATRDRAFT_47388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_47388
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_47388
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
PHATRDRAFT_47388
RNA polymerase I system
PHATRDRAFT_47388
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
PHATRDRAFT_47388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW5_SPT5
KOW4_SPT5
Spt5-NGN
KOW
KOW2_Spt5
KOWx_SPT5
KOW7_SPT5
KOW1_SPT5
Taxilin
GPKOW_C
Motif
Other DBs
NCBI-GeneID:
7202533
NCBI-ProteinID:
XP_002181570
JGI:
47388
UniProt:
B7G376
LinkDB
All DBs
Position
13:495490..498993
Genome browser
AA seq
1057 aa
AA seq
DB search
MSKKFFRPPPQAMDDSDSEEDEEELLDDDAEVDDEDVTEVSPPNKSKPTNNANLSESDDD
DDEPDERPPKRKGRHIDNNGNADARSSNKRAKPTSFFELEAEASDSEDDDADDAAKQLHK
DSEQMDEEAREIIRQQDRRRAQAGGRFDRSVAEISADIENRHRAQRRVRPPMDRDDEDDF
DDGGAPPDATPEGYTAVAQQSLVPSVSDPSMWMVSCANGKEHELVCQIMNKCVAMARQGR
PVGISSAIAAQSKGKIYLESFSEPAVVDAIQGVRGLLQYTMRLVPIGDMTTVMTVTSRKK
PVQKNEWVRMTRGHYKHDLALVKDVKESGLKCVVQCVPRLDLTLADLPPAEARMRRKTVR
PPQKFFNPQEIAALGRHGLTRQRFPGLNLYCDYFDGNYYHDGYLLKEMTVGSMIKACTDE
DPPTLDELQRFQRRQSKQNEEDGGDENEGSKMAASLLDELSDLQGRTGLGKTKTGGGGGL
LIGDTIEVIEGDLIGMRGKLVSLDGTTVKVKPINANVDLGGTDEIEFLGNQLRKYIPVGA
HVKVTDGRYANETGVVVAVEQLDGETDFTAVVLTDVTNKEISVRTSQLRESAEVASGQDK
LQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIVREIRPEELRGKRNSTSQRA
VALDVQGNQIRASDSVNVVEGPHKGKTATIKRMSRAQLFLHSQTRTDHAGIFVVRSRSCV
LAGTRTQARGATPDSGVSPFATPQSQSRGGPQPGRGKRDDGLIGKTVRIQAGQWKGYLGT
VADATATHVQVELHSRLKKVMVVRERVAVAGDKFGATQEQNRMVDVNPNPIAPTTPFVAA
GQTPMHGGATPMHGGALDGDTSDEVWQPGGAVDQDAVKDDDGWGSTANDGFGSPKDGDSD
GWGSTSDQPKGWGTYPAVKDNTVKKEVPSTNGNGVKREQAKREMEAELDTEETPGWYMER
VCVQNKSKDKQGVIKEIDPATKAAVVEYEDQTFETLRASELAMVPPSEHDTVLVTGGNEI
GLEGSLVCVDGSDAILKDANDEFKIVEISFLAKVKTI
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagttctttcgcccgccgccacaggctatggatgactcggattcggaagaa
gacgaggaagaactcttggacgatgacgccgaagtagacgacgaagacgtcaccgaggtg
tctccacccaacaaatccaaaccgaccaacaatgccaatcttagcgagtcggacgatgac
gacgacgagccagacgaacgacccccgaaacgcaaaggtcgccacatcgataacaacggc
aatgcggacgctcgctcttccaacaaacgtgccaaacccacttcgttcttcgaactcgaa
gccgaggcctccgacagcgaagacgacgacgccgatgacgccgccaagcaactgcacaag
gacagtgaacaaatggacgaagaagccagggaaatcattcgtcaacaagaccggcgccgt
gcccaggccggtggtcgcttcgaccgatccgtggccgaaatatccgccgatatcgaaaac
cggcaccgtgcgcaacgtcgcgttcgtccgccgatggaccgggacgacgaagacgacttt
gacgacggtggggcaccgccagacgctacccccgaaggctacaccgccgtggcgcagcag
tccctcgtcccctccgtttcggatccatccatgtggatggtctcttgtgccaacggcaag
gaacacgaactcgtttgtcaaatcatgaacaagtgtgtcgctatggcccgtcaaggacga
ccggtcggtattagctccgcgattgccgcacagtccaagggtaagatatacttggagagt
tttagcgaaccggccgtggtggacgccatccaaggagtccgcggcttgctacagtacacg
atgcggctcgtaccaatcggtgacatgacgaccgtcatgaccgtcacgtcacgcaagaaa
cccgtacaaaagaacgaatgggtccgcatgacccgcggacactacaagcacgacctcgcc
ctcgtcaaggacgttaaggaaagcggactcaagtgcgttgtgcagtgtgtcccgcgactg
gaccttactctggcagatctaccgcccgctgaagcccgcatgcgacgtaaaaccgtgcgt
ccgccgcaaaaattcttcaacccgcaagaaatcgcggcgttgggacgacacggactgacc
cgccaacgctttcccggcctgaacctgtactgtgactactttgacgggaactactatcac
gacgggtacctcctcaaggaaatgacggtgggatccatgatcaaagcctgtacggacgag
gatccgccgacgttggatgaactgcaacggtttcagcggcgtcaatccaagcagaatgag
gaagacggtggcgacgagaatgaaggatccaaaatggccgcatcgttgttggacgagctg
tccgacttgcaaggacggacggggcttggtaaaacaaagactggcggcggtgggggtcta
ttgataggtgatactattgaagtgatcgaaggcgatttaattggcatgcgtggaaagttg
gtgagcttggacggtaccaccgtcaaggtcaaacccatcaacgccaacgtcgatttgggt
ggaacggacgaaattgagttcttgggtaatcagttgcgcaagtacattccggtcggagct
cacgtcaaggtgacggatggacggtacgccaacgagacgggcgttgtggtggccgtcgag
caactcgatggcgaaacggacttcaccgcggttgtattgaccgacgtgaccaacaaggaa
atctcggtccgcacgtctcagttacgagaatccgctgaagttgcgtctggtcaagacaag
ctacaagggtatgaactatacgacttggtcgtgttgagtggtggaggctccgccaatgaa
gtcggtgtaattgttcgtgtgggtcgggaagactttaccgtcatcaacaatcacggtatt
gttcgagaaattcgaccggaggagctgcgtggaaagcgcaactcgacatcacaacgtgcg
gtggctctcgatgtacaaggcaaccaaattcgtgccagtgattccgtcaacgttgtggaa
ggtcctcacaaaggcaagacggcgacgatcaagcgcatgagccgagcgcaactctttttg
cattctcagacccgcacggatcatgccggtatctttgtcgttcgcagccgaagctgtgta
ttggccgggacacggacacaagcccgtggcgcaacacccgacagcggagtcagccctttc
gcgacgcctcagtcgcaatcgcgaggagggccacaacctggtcggggcaaacgcgacgat
ggtttgatcggcaagactgtgcgtattcaggcgggacaatggaagggatacctggggact
gttgcggatgcgacggcgacacacgttcaggtcgagttacactcccgattaaagaaagtg
atggttgttcgtgaacgagtagccgttgcgggtgacaagtttggggccacgcaggaacag
aatcgcatggtggatgtgaatcccaatcccattgccccgactacgccttttgtagcggct
ggtcaaaccccaatgcacggcggagcaacaccgatgcatgggggtgcgctggatggcgat
accagtgatgaggtatggcagcctggtggtgctgttgatcaggatgctgttaaagatgac
gatggctggggctcgaccgctaatgatggattcggttcgccgaaagacggcgacagcgac
ggttggggatctactagcgatcagccgaaaggctggggtacgtacccagcagtcaaggat
aatactgttaagaaggaagtaccttctaccaatggcaacggtgtaaagcgcgagcaggca
aagcgcgaaatggaagcagagcttgatacggaagagacgcccggctggtacatggaacga
gtttgtgtgcagaacaaatcaaaagataagcagggagtcatcaaggagattgatcctgcc
acaaaggcggctgtcgtggagtacgaagaccaaacatttgaaactcttcgtgcgagtgaa
cttgctatggtcccacccagcgaacacgacaccgttctggtcactgggggcaacgaaatt
ggattggaagggtcattggtttgcgtcgatggttctgatgccattctcaaggatgcaaac
gatgaatttaagattgttgagatctcgttcctggccaaggtgaaaactatatag
DBGET
integrated database retrieval system
