Phaeodactylum tricornutum: PHATRDRAFT_47417
Help
Entry
PHATRDRAFT_47417 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03440
Homologous recombination
pti03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PHATRDRAFT_47417
03460 Fanconi anemia pathway
PHATRDRAFT_47417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pti03032
]
PHATRDRAFT_47417
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_47417
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PHATRDRAFT_47417
DNA replication proteins [BR:
pti03032
]
Eukaryotic type
DNA Topoisomerases
PHATRDRAFT_47417
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
PHATRDRAFT_47417
FA (Fanconi anemia) pathway
PHATRDRAFT_47417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
7202552
NCBI-ProteinID:
XP_002181586
JGI:
47417
UniProt:
B7G3B1
LinkDB
All DBs
Position
13:576027..579128
Genome browser
AA seq
1009 aa
AA seq
DB search
MDNGEKKSTTWQTLAWCTRNSFHMRLKRDKKLICRMRQNNVPTVLNVAEKPSVARALASV
FARLPNAVDRGMRREGNQVFSHENVCFPSVFSQGNGVCVQGPSTSQRAALYMITTSVRGH
LASQDFPPAYGWSKCDPIALFEAPIETSYRDDMQPLERMLKSLSRQAQVLILWLDCDREG
EAIGDEVRTVCLGSNSRLQVYRARFSTVLPVEIERALQTLGRVNEYMVAAVQARSTLDLR
VGAAFTRFQTLRLQRKFDGFAEQGVISYGPCQFPTLGFVVERWARIETFIPEDFWHLELA
ISVDDTYHQQSQEEDQSAARGRTQQNRTIHFSWKRGYLYDKLLTTVLFEECLEAGEAVVT
AMNGRTRNKWRPVPLATVELQKRASMYLRIGSETLMSAAEELYQQGYISYPRTETERFRP
EFEHRPLIQQFSSLQGEFGAYASKLLNENGFQIPRAGKSDDQAHPPITPAKAVDPNTIQD
QIQRKIYSLIVKHYLACCSRDAVGRGTTLTVRMGTEEFNATGLMVIEKNWLEIYSPWERW
GSGQGELPPLQVGSRIRPTSFLMKEGRSGPPQPISEVELISLMDRNGIGTDATIAQHIST
ILDREYARKDGRQKFLPTPLGIALVEGYNSMGYQLNKPDLRREMEAECNEVASGRKTKEE
IMVPILAKMKSCYETARAEARKLDEAVARHFPRLGAGESTSQVVEESFSECGVCRNSMAL
KQERENNNRTTARNTVRRKLLYCSTCRAGWTLPRGVVRPKTEQEDNGPPVKCPICQFQVI
RILRGEGYEGNGYHVCPKCFSDPPSDHGGASNAGDFRCFACQHPTCALASGTPGGDVEVF
RCPFCHPSAQPTSTSDSGKVCVRKTSRGYVLSCNKYVRGQDRCSYTIWLPKECHKVSVLS
GDENQNEICGRCSSPRAVIRKVHFVWKPGSVPPHLGRECTVCVLCDADFRRELNISLPQM
NQVQSRPRTTAGRAGHRGGGGTETGQGGAGNTCFHCGQPGHFANSCPNR
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggacaatggggaaaagaagtcgacgacctggcaaaccctcgcttggtgcactcgcaat
tcttttcatatgagattgaagagagacaagaaattgatctgtcgaatgcggcaaaacaac
gtcccaacggttttaaatgtcgccgaaaagccatccgtggcccgggctttggcttctgtc
tttgcccgattacccaacgccgttgatcgtggaatgcgtcgagagggtaatcaagtgttc
agccacgaaaatgtctgttttcctagcgtgttttctcaaggaaatggtgtatgcgttcaa
ggacctagtacgtcgcaacgagctgctttgtatatgataacaacatccgtaaggggtcat
ttagcgtcccaagactttcctccggcgtacggatggtccaagtgcgacccaattgccttg
tttgaagctccgattgaaacgtcgtatcgcgacgacatgcagccccttgaacgcatgttg
aagtcattgtcacgtcaagcccaggtcctaattctctggttagattgcgatcgggaagga
gaagccattggcgatgaagtacgtaccgtgtgcttggggtcaaattcaaggctgcaggtg
taccgggcacggttttcgaccgtgttgccagttgaaattgagagagccctacaaacacta
ggtcgagtgaacgagtacatggtggcagcggtccaagcccgatctacgctagatctacga
gtaggtgccgcctttacacgatttcaaaccctacgattgcaacgcaaatttgacggcttt
gctgagcagggtgtcatctcctacggcccatgccagtttccgactttgggatttgttgtg
gagcgatgggcacggattgagacgttcatcccagaggacttttggcatttagagctagcg
atttctgtggatgacacttaccaccagcaatcgcaagaagaagaccaaagtgctgctcgt
ggacgtacccaacaaaatcggacaattcacttttcgtggaaacgcggatacttgtacgat
aaacttctgaccaccgtgctattcgaagagtgtttggaagctggagaagcggtcgttacc
gcaatgaatgggcgcactaggaataagtggcgccccgtcccactagcaacggtcgaacta
caaaagcgggcttcaatgtacttgcgaattggatccgaaaccttgatgtcggccgcagaa
gaattatatcaacaaggttatatatcctacccccgtaccgaaacagaacgtttcagacca
gagtttgagcaccgcccattaatacagcaattttcctcacttcaaggggagttcggggcc
tatgcttccaagttgctgaatgaaaatgggtttcaaattcctcgtgcggggaaaagcgat
gatcaggcccatcctcccatcacgcctgccaaagccgttgatccaaatactattcaggac
cagatacagcgaaaaatatattctttgattgtaaagcactacttggcctgctgctctcgt
gatgctgttgggagaggaacaacgttgacagtccgaatgggcaccgaagagttcaatgca
actggtttgatggttatcgagaagaattggttagaaatatattccccctgggaacgttgg
ggctcagggcagggagaattacctccgctccaagtcggtagtcgcataaggccgacatcg
ttcctgatgaaggagggtcgctcaggccctccacaacccatttcagaggtggagcttatt
tcgctcatggatcgcaatggtattggaactgatgccacgattgcgcaacacatatccacc
attctcgatcgcgagtatgctagaaaggacggcaggcaaaaatttctaccaacacctctg
ggaatcgcactcgtggaaggctacaattccatgggatatcaactgaacaagcccgacttg
cgccgtgagatggaggccgaatgcaacgaagtcgcttctggacgtaaaactaaggaagaa
attatggtgcccattcttgcgaaaatgaaaagctgctacgaaacggcaagagctgaagct
cgcaagctggacgaagctgttgcacgacattttcctcgactcggtgccggtgagagcaca
tctcaagttgtggaagagagtttcagcgaatgcggagtctgtcgcaacagcatggcgttg
aagcaagaacgagaaaataacaaccgtacaacagctcgcaacactgtgcggcgcaaactg
ttgtactgcagcacatgccgggcaggctggactttaccacggggtgtagtccgaccaaaa
acagaacaagaggacaatggtcctcctgtcaaatgccccatatgtcaatttcaggtgatt
cggatattgcgaggggagggctatgaaggcaacggttatcacgtttgccccaagtgcttt
tcggatccaccttccgatcacggtggtgccagcaacgctggcgacttccgctgctttgct
tgtcaacatccaacctgtgctctcgccagcggaacaccgggaggtgacgttgaagtcttt
cgatgccccttttgccatccatcggcacaaccaacttcgacctctgattccgggaaagta
tgcgtacgcaaaacatcacgcggatacgtactttcttgcaacaagtatgtacgaggtcag
gaccgatgctcgtatacaatctggctccccaaggaatgccacaaagtctctgtgctctcg
ggcgatgaaaaccaaaacgagatctgtggtcgatgttcctcgccgcgtgctgtcattcgc
aaggtccatttcgtctggaaacccggtagcgttccgccgcacttggggcgtgaatgcacc
gtgtgcgtgctatgcgatgccgattttcgtcgtgaactcaatatttcgttgccacagatg
aaccaagtacaaagtcgaccccgcacgacagccggtcgggcagggcatcgcggtggaggt
ggaacagagacagggcagggaggtgcaggaaacacttgtttccactgcggccagcccggt
cattttgccaacagctgtccaaatagatag
DBGET
integrated database retrieval system
