Phaeodactylum tricornutum: PHATRDRAFT_47526
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Entry
PHATRDRAFT_47526 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHATRDRAFT_47526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_47526
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PHATRDRAFT_47526
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp12
Beta-prop_VPS8
Utp21
Motif
Other DBs
NCBI-GeneID:
7202769
NCBI-ProteinID:
XP_002181826
JGI:
47526
UniProt:
B7G3Z5
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Position
14:19302..21420
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AA seq
594 aa
AA seq
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MAPVVAALSANGDLVAAALPSASPSSSSSALRVLVFQTATAQLQTTLATSSKKLADSSTS
QHQVIRAITFGNQNTLVAALTENAQSHTALHRSGGGAVLVWDLTRGVLAYEIPTAQSVDQ
SILSIALYDSHLYVLLSLHSGTSKNKSNANSKLQIHQYDAVTGVLQRKIKAGKQGSAHGC
SLAVTEGTLLVRQADVVRVLHRHTASKIAKLSVGSVGNDDVDDTNRSLVNSIAAARNVGA
TLAGDQMVLFHSLTGAKFVKQDLPSHADRTGLQVWDSTNTEADGKDSDEVAFVTDGVDIY
RIRNSDDSSTGSSRVEKVTRLVVDANQDRNDTAVLGWQNQVIVVVANRQQKSNAASLQIR
RHNLVDEIVIAWQTPEFDKDITMKDPSMSLAASKRKADMQTVLGPAQAGGEAKAIDGPIP
KRTKMDEEEEEEEGGIEGPSVGERLRLLRQALEKEEESDDDDNDDDTEKSKISYPPKKAT
TESLTQLLTQALQSGDDSMLELALSVRDTNILQETCQQLADEHLPTLLNALTSRLASKPA
RAEFLCVWIRVVLLTGRIRSAGHLQPLRNLLQERIEVFPALLQLEGRLSMMGRL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggcaccagtcgtagcggcactttcggccaatggcgatttagtggcggctgcgctgccg
tcggcgtcgccctcgtcttcctcctcggcattgcgggtgctcgtcttccaaaccgccacg
gcgcagctgcaaacgacgctcgctacatcatccaagaaattagcagacagcagtactagt
cagcatcaagttatccgggcgattacctttggtaaccaaaacacgctggtggcggccttg
acggagaacgcccaaagccataccgccctccatcgatccggtggaggagctgtactggtt
tgggatctgacacgcggcgtgttggcctacgaaatacccacagctcaatcagtggaccaa
agcatcctcagcatcgcgctgtacgattctcatttatatgtgttgctatccttgcacagc
ggaaccagcaagaataagtccaacgccaacagtaaactacagattcatcaatacgatgct
gtcacgggagttttgcaacggaaaatcaaagccggaaaacaaggatcagcccacggttgt
tccttggccgttaccgagggcacactcttggtccgacaggccgatgtcgtccgggtcttg
catcgacacacggcgagcaaaattgccaaactctcagtgggatcagtgggaaacgacgat
gtcgatgataccaaccgcagtctcgtcaattctattgcagcggctcgcaacgtcggtgcc
acactcgctggggatcaaatggtgcttttccattccctgactggagccaagtttgtcaaa
caagatctgccgtcgcacgcggaccgtacaggcttgcaagtttgggactctaccaatact
gaagccgatggaaaggacagtgacgaggttgcgtttgtgaccgatggggttgacatttat
cgtatccgtaacagtgacgattcctcgaccggctcgtctcgggtggagaaggtcaccaga
ctcgtcgttgacgcgaaccaagatcgcaacgataccgcagtattgggatggcagaaccag
gtaattgtggtcgttgccaaccggcaacaaaagagcaatgcagcttccttgcagattcga
cgacacaatctcgtcgacgagattgtgatagcgtggcagacccccgaattcgataaggat
atcacaatgaaagacccgagcatgtcgctggccgccagtaagcgtaaagcagacatgcag
actgttctaggacccgcccaagcgggaggcgaagcaaaagcgatcgatggtccgataccg
aagcgaactaaaatggacgaggaagaagaagaggaagaagggggaatagagggaccttct
gtaggcgaacgacttaggctgctgcgccaagcacttgaaaaggaagaggaaagcgatgat
gatgacaacgatgacgacacggaaaagtcaaaaatctcctacccgccgaagaaggccacg
accgagtcgttgacacagttgttaacgcaagcgttgcaatctggcgatgactccatgtta
gagttggccttgtctgtacgcgacaccaatatactacaggaaacctgtcagcaacttgcg
gacgagcacttgccaactttgttgaatgcactgacatctagactcgcatcgaagccagct
cgcgccgaatttctctgcgtttggatacgggtagtactattgacgggtcggattcgatcg
gccgggcatttgcagccgctgcggaatttgctacaggaacgcatcgaagtatttccggcc
ctcttgcagctcgaaggccgattgagtatgatggggaggttataa
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