Phaeodactylum tricornutum: PHATRDRAFT_47879
Help
Entry
PHATRDRAFT_47879 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K11292
transcription elongation factor SPT6
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_47879
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_47879
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
PHATRDRAFT_47879
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
PHATRDRAFT_47879
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
S1
Spt6_S1
S1_RRP5
SPT6_acidic
ARM_LIN
Mis12
Tex_YqgF
ORD
Motif
Other DBs
NCBI-GeneID:
7203094
NCBI-ProteinID:
XP_002182370
JGI:
47879
UniProt:
B7G582
LinkDB
All DBs
Position
15:complement(317602..>323758)
Genome browser
AA seq
1958 aa
AA seq
DB search
MSSRKNDEHEGLFDEEDSDEQGGPSASQPPRKRKKLDRSSMIDDAAEESGEDDDDDDEED
DDDDDNNDYVKDGFVVDEEEEKIKKDDLEDSEDDDDDDDDEDHGESSAKKRRLKKVRKMG
LMDRLDDDDLALVQEATAAGRRDHPQTDDIDSDEERAAAERRRVVAKTEAELRKGLFDDD
DEDDADDNNQAAAESTVQRKKAPARVERYDEDGMDDFIDDDIGDQGQIMASERRGYDDGD
TNAISEAQLNEASEIFGTDYLEFMQEDNALDDEEAELMGGRDKYRERGVDMGIGSDEDLI
SEEDDDDDLFAEDEDEEIDSSTSAQQRAEALRLKREKRQLAKAERRRQALQKKTERRKAQ
LRRAFEPVQLVENFCTERDDDIRQKDIPERFYDWNVPFYGSEVDGMNEEEEIQAKWIADR
IPAVSSEYALLSEDEQKVVLQSISNALRFMHRDKLEPVFIKHYRKDYVVSTSVRGNLYAI
MDEEVEWDRVVNARGKVEELLVSITTAADENTLARADVERMEALQHEMSSAQEKLEEAAR
QETTVKVELEAVGGDDDDDSDDELFGDDDDKEEEKKKERDRLTAHLSTIQSLLEARADRV
AQLQSQIKIAEAQNQALSDRGPIERIAKKTHREVLWNQHDLSSYLSELVDVKHILDVNGY
LNLLKEGNDAIRKKEMPLLDAVDDNGGGNRKRSRRFDRDFYRTCVAEGLRSICYRFLLAP
NRVGIKLQDNITSGIFDFSKILPGEENTEGAGDPLKWVAPVIENDPSSFASELIGSGELV
LLSSTGGGATDDAEAKDPLRGCRYVAAMELAYEPRIRMVLRNLFRMHAVITTKPTKKGID
EIDSFHDFFGLHLIRNKPVKDHFPLDKVESSIRKADLGEEERRELDLEMQKREYDSCLQY
LNILKAEESGDITSHVHLPLLEHLDDWYKIDTDQLLGRDNQDDSPLYNELEKVYLPPDVD
TDQWNGERCKVLRFALNTFLLPQFEAELRRDLRDAATRIGVKMAAENLRKLAMEGPYRPA
SILHTENRFLYPTEDMAIVGICCTADGKDATYLASVTERGESNDFLAVPSGTKVDQGKMR
EKVVTFLMQCRPAAIVVGTSGGFESRLLTRKMGDLLKEAEQRWTNRYIQGEDEDDEAFEI
RQAAFRQLQPSAHFDDQDEGDWKCNVDLIDDSVAQLFGRSVRGRKEFPDFAVNLKCAIAV
ARYAQDPLGELTYAWSVASDAGAFGTEMLYLNIHPMQQLLPRTRLLREYERILCDVTAEV
GTDINSACTFDHLRGLLVFVAGMGPRKAANLKQTLSQLGSALSRRRDLLENRMIGPVVYN
NLVAFLRIRRVDQLVEQFLHPLDDTRLHPDVYLRHNWAIKIAFDALEREDSKTKDAASIK
ALRDVMENSHHEVERLFMATKSEWEMNYGLTFNIKDWDPRVNVPKDMWRDKVEELDLEAF
ANMIEDTKLGRWHSHLEMIKWEFRLPYVDPRKPMEPVSSDRLFSLITGESDQSLRPGKEV
TGKVVRNGDFGSRVKLEGEIPAFIPLRNLSDEHVETAEDIVAAGQIVTAVITMVKKEHMT
VDMSLKMEDFRKNPSSWERPLSLPPIDVHFDLVAAAKIEEDNNKRREAHLEALQLSLGTK
GADGEEGTGQRKRIGRVARRACTHPAFRNAKTDEITRELKEGGAAMVGEALIRPSSKNSD
ALAIHWVVKEGSIKVVEVIEEDKETEASIGNTLKVKSQSYGSIDELLGRYIAPMNDFVEE
LVNHRKFLDIPEDELDAKLVAEKKENPKSIPYSACWMENHAGYASLRFVSSTNARSHPIG
ISPTGYTWGSNTFPSLDRLINAFKKNPRGAVKSKPPISTPATTAPSVAPSKPPPPRGRWG
DKAAAPPPPAPYGNHVLPPMAPLQPSTNGWGAPSAPITGWSQPPSLPPPPVYTHSAPPQR
PPPPPPPPSLPPPPSYTQPQLPPAPPVPLPLPPPPRCL
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgtaagaatgacgaacacgagggattatttgacgaggaagactctgacgag
cagggcggtcccagtgcttcgcaaccccccagaaagcgtaagaagcttgaccggtcctcc
atgattgatgacgccgccgaggaatccggcgaagatgacgacgacgacgatgaggaagac
gacgacgatgatgacaacaacgattacgttaaggacggattcgtcgtcgacgaggaagag
gaaaaaataaaaaaagacgatctcgaagactcggaggacgacgacgacgatgatgacgat
gaagaccacggtgagagcagcgcgaagaaacgtcgtctcaaaaaagtccgtaaaatggga
ctcatggaccgtctggacgatgacgatttggcactggtccaggaagctacagctgcgggt
cgtcgggatcacccccaaacggacgacattgattcggatgaagaacgagctgccgctgag
cgtcgccgagttgtggccaagaccgaagccgaattgcgtaaaggcttgttcgatgatgat
gatgaggatgacgctgacgataataatcaagctgccgccgagtcgaccgtgcaacgcaaa
aaggctccggcacgtgttgaacgctacgatgaagacggaatggacgatttcattgacgat
gacattggtgatcagggtcaaatcatggcttcggaacgccgaggctacgacgatggggat
acaaacgcaatcagtgaagcacagctaaacgaagcatcggagatttttgggacggattac
ctggagtttatgcaagaagataacgccctcgatgacgaagaagcggagctcatgggtggg
agagacaagtaccgtgagcgtggtgtcgatatgggtataggctcggacgaagatctcata
tcggaagaagatgacgacgacgatctcttcgctgaagatgaagacgaagaaattgacagc
tccacttcagcgcaacaacgcgctgaagccttacgtctaaagcgcgaaaagcgccagctc
gccaaagcggaacgtcgtcggcaagctcttcaaaaaaagacggaacgtcgtaaagcccag
ttgcgtcgagcctttgaaccggtacaactagtggaaaacttctgcactgagcgtgacgat
gacattcgtcaaaaagatattcccgaacgcttttatgattggaatgttccattttacggc
tcggaggtagacgggatgaatgaagaagaagaaattcaggcaaagtggattgctgaccgt
attccagctgtatcgtcagaatacgcattgcttagtgaagacgaacaaaaggttgtactt
cagtctatttcaaacgctttgcgtttcatgcatcgcgacaaattagagccggtttttatc
aagcactatcgcaaggattacgttgtttcgacttcggtgcgaggcaatttgtacgctatt
atggacgaagaggtcgaatgggatcgcgtcgttaatgcacgcgggaaggtggaagagctg
ctggtgtctataacgacagccgcggacgagaacactttagcacgagcggatgtagaaaga
atggaagctctccaacatgaaatgtcttcagcccaagaaaaactcgaggaggcggcgagg
caagagacgactgtcaaggtcgaattggaagcagtaggaggcgacgacgacgatgattcg
gatgacgaactgtttggagacgatgatgataaggaagaggagaagaaaaaagaacgagac
cgtttgacagctcatttgtcgaccattcagtctctattagaagctcgagcagatagggtc
gctcagctgcagtcccagataaagattgccgaagcacaaaatcaggcattgagtgaccgc
ggtcctattgagcgcattgcaaagaaaactcatagggaagtcttatggaatcaacatgac
ttgtcgtcgtatttatcggagctcgtcgatgtaaagcatattctggacgtaaatggctat
ttgaatttgctcaaagaaggaaacgacgctatccggaagaaggagatgccacttttggac
gccgtcgatgacaatggcggcggaaatcgcaaacgtagccgccgctttgatcgtgacttt
taccgcacgtgcgttgcggaggggctccgttccatttgctacaggttcttgcttgctccg
aatcgtgttggaatcaagctgcaagacaacatcacgagtggtatattcgatttctcaaaa
attttgcccggcgaggaaaatacagaaggagctggggatcctctcaaatgggtcgcaccc
gtaattgaaaacgatccttcatcatttgccagtgaattgataggaagtggggaacttgtc
ttgctctcatcgacaggcggaggcgcaacagatgatgcggaagcaaaggacccattgcgg
gggtgtagatatgtcgccgcgatggaattggcctacgaacctcgcattcgtatggttctt
cgtaatctgttccgaatgcatgctgttatcacaacaaagccgacgaagaaaggtatagat
gagatcgattccttccatgatttctttgggcttcatcttatccgtaacaaaccagtgaag
gaccatttcccactcgataaagtggagagcagcatacggaaagcggatttgggagaagag
gagcggcgtgagctcgacttggaaatgcagaaacgcgaatatgacagctgccttcagtat
ttaaacatactgaaagcggaagaaagcggtgacataacttctcacgtccatcttcccctg
cttgagcatctagatgattggtacaaaattgatacggatcagcttttaggtcgcgacaac
caagacgattctccactatataacgaacttgagaaggtgtacttaccaccagatgttgat
actgatcaatggaatggagagcgttgtaaggttctccggtttgccttaaacacttttcta
cttccacaatttgaagccgagcttcgtcgtgacctacgcgatgctgccactaggattggg
gttaagatggctgcagagaatctccgcaaattagcaatggaaggaccatatcgtcctgct
tctatcttgcacaccgaaaatcggttcttgtacccaacggaagacatggcgattgtcggt
atctgctgtacagccgacggcaaggacgccacgtatttagcttcagtgacggaacggggc
gagtccaatgactttctcgccgttccatctggaacgaaagttgatcaagggaaaatgcga
gagaaagttgtaacgtttcttatgcaatgtcgccccgctgcaattgttgtaggaacctca
ggtggcttcgagagcaggcttcttacaaggaagatgggtgatcttctcaaggaggcagag
cagcgctggactaaccgctatatccaaggggaagacgaagacgacgaggcgttcgaaata
aggcaggccgcgttcaggcaactgcagccttcagctcattttgacgaccaagatgaaggc
gactggaagtgcaacgtagatcttatcgacgacagtgttgcccagcttttcgggagaagc
gttcgtggacggaaagagtttcccgatttcgccgtcaatttgaaatgcgcaatagcagtt
gcgcgatatgctcaagatccgttgggtgaacttacttatgcttggagcgttgctagtgac
gcaggagccttcggaacagagatgctgtacctgaatatccatccgatgcagcagcttctg
ccgagaacccgacttcttcgagagtatgagcgtatcttatgtgatgtgacggctgaagtc
ggcacagacattaattctgcctgtactttcgatcacctccgtgggttgctggtattcgtc
gcaggaatgggtccccgcaaggccgcaaatttaaagcaaactctatcgcagctcggaagt
gcactctccagacgtcgcgatcttctggagaatagaatgataggccctgttgtttacaat
aatttggttgcgtttcttcgcattcgccgagtggatcagcttgttgagcaatttcttcat
ccgctcgacgatacaagactacatcctgatgtttaccttcgacataattgggcaatcaaa
attgctttcgatgctctagaacgcgaagactcgaaaacgaaagacgcagcgtccatcaaa
gcactccgtgacgtcatggaaaattctcatcatgaagttgagcggctttttatggccacg
aagtctgaatgggagatgaattatggattaacattcaacatcaaggattgggaccccaga
gtgaacgttccaaaagatatgtggcgtgataaagtggaagaacttgacctcgaggcgttc
gcaaacatgatcgaggacacaaagctcggaagatggcactctcatcttgaaatgattaag
tgggagtttcgacttccatacgtcgacccgagaaagccgatggagcctgtatctagcgat
cgtctgttcagtctaatcacaggggagtcggaccagtcactgcggcctggaaaggaggtg
actgggaaagtcgtacgcaatggagattttggatcacgtgtcaaactcgaaggagaaatc
cctgccttcattcctctacgaaatctctcggatgagcatgtagaaactgccgaagatatc
gtggcagcgggccaaatcgtgactgcggttattacaatggtaaagaaggaacatatgact
gtcgatatgagtctcaaaatggaagatttccggaagaatcctagttcttgggagcgaccg
ctgtcacttcctcccatcgacgttcatttcgatctagttgccgcggcgaaaattgaggaa
gacaacaacaaaaggcgcgaggcgcatttggaggccttgcagcttagcctgggcacgaaa
ggcgctgacggtgaagaaggcactggccaaagaaagagaataggtagagtcgctcgccgc
gcatgtacacaccctgcatttaggaacgccaagacggacgagattactcgtgaattgaag
gaaggtggtgcggcaatggttggcgaagcgctcatacgtcccagcagcaaaaacagcgat
gcgcttgccattcattgggtggtgaaggaagggagtatcaaagtcgtggaggtgattgaa
gaagacaaggaaacggaagcaagcataggaaacacgctgaaggtgaaatctcaatcatat
gggagtatcgatgaattgcttgggcgctatattgctccgatgaatgattttgttgaggaa
cttgtcaatcatcgtaaattcttggatattccggaagacgagcttgacgcaaagcttgtt
gcggagaagaaagaaaatccgaaatcgattccttactcagcatgctggatggaaaaccat
gccgggtatgcttctcttcgctttgtttccagtacaaacgcacgaagccacccgatcgga
atttcccctactggctatacctggggatcaaatacctttcccagcctagatagactaatc
aacgcattcaagaagaacccgagaggggcggtcaaaagcaagcctccaatttccacaccg
gcgaccactgcacccagcgttgctccttcaaagccaccccctccgagaggacggtggggc
gacaaggcagcagcaccgccaccacccgctccttacggaaatcatgttctgccccctatg
gctcccctgcaaccatcaaccaatgggtggggcgcgccttcggcaccgattacgggttgg
tcgcagccgccatccctaccgccgccgccggtgtatacccattcggctcctccccaacgg
ccaccaccaccgccgcccccaccgagtctgccgccgccgccatcttatacacagccccag
ctgccgcctgccccaccagttccgttacctttgccaccgccgccgcgttgcctttga
DBGET
integrated database retrieval system
