Phaeodactylum tricornutum: PHATRDRAFT_50132
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Entry
PHATRDRAFT_50132 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03013
Nucleocytoplasmic transport
pti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PHATRDRAFT_50132
03015 mRNA surveillance pathway
PHATRDRAFT_50132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_50132
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PHATRDRAFT_50132
mRNA cycle factors
P-body specific factors
PHATRDRAFT_50132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
7198839
NCBI-ProteinID:
XP_002185058
JGI:
50132
UniProt:
B7GD25
LinkDB
All DBs
Position
27:complement(144576..149219)
Genome browser
AA seq
1477 aa
AA seq
DB search
MSGRSSAASSASATGRGGGSAGRGRGNTKGRGKTGGRGPKPKANASVSKETGASTPSLQT
DSSGNANKALPTKDRGGSGRENRTKPNPVGSKTQGNQKRNTPNPPTLSPKDQQRHQEIEK
HAQEVAAEKARAVALARAQAAAIKVREQKQADVDQKVREARDLLQNVINATHAHQRTRAD
MEPETLQAFRKTFQANKKNLKTDLKKCTTFVKKVKSGVAWSMKPEDIVKDVSTLNLSRYV
EEVANGILESSTKPKVSELPSVLSLVTTMHQRYEDFLSMLVPALWKVVNAKPTPAMAKLR
RLYVRILTELVLNGIVTETKPLIACVTDASGANASQGTNCSVQDANLMVAFSKAAGFELL
DIVPTSVHSAIKLIGNYNETEACTPDGADAIFPSQDVIKQAYPVVEQIPSVLTERAVAAQ
VSEVLVTHCRAAYHALSTNLTQTHRKLLQLEKRCEQDRLLSGSLTEAREKGLVDARKLQE
SLQKAVDALADVLDERLPILQQQEEDGDADGSGGLEVWTKGTDGEEDLGPFDDEEMRTFY
CDVPDLLTTTPPALLGLAPEAIESRKLDNQRKYGAEGEVVDEGDDGTELPLGSQEEFENE
EDEELKDEEDPEIEEQKDTPHYRLMVLLEEELPECHRREQLDELTEKFCTNHGSSKNSRK
RLSRTLFLVPRSRLDLLPYYSRMAATVDRVWTDIASPLVADLEHQFHGQAKFKKNQNIES
RMKTARYIGELTKFRVAPPIVFLRCLKRCLEDFTGNNVDVTCCLLESCGRFLFRLKHTSG
RIATLMETITRLSKAKNLDERHQSLIQAAFYAVKPPPSGPRKQQKEYPPLEAYVRYLLMV
RLEPTDTSVSFTAKELIRLPWSDPEQQCGALVCRIMLKACRKGRYRTIYAIAAVADRLRP
QRSACEAPVRLVDALLEELRWALEHPDFRDQQRTITYARLLGELYCSSQVTGQLVINQLY
DFINIGHEIPNALREASQKLAASQGEESGEQLPLFTSMTGVSQTIKEDEEMEDDNLDAAE
QAPAPPTPVAVSQHSKYDPRVPSLEDPPNASYRVKLVCTVLEVVAKSIMSRSVLPRMRGF
LAAFQRYLFTKTTLPTDVEFSLLDTFDILDSQWKRFTRTSRDKELEEGSESGFPRYSSWL
DAHNVTVAFEESDALLELQKRNHVETLADESKTLGDLHVSMDAHSLNDDSASLLEDEEDD
ASLSVSAKGSVAEDTNDDETESGDSDEDYEGVTEDDIDSESGGNSEEEEEEFDEEAYMRQ
LEEEAFERELRRVTIEALEKGKNTSRKLVAENMVSGSQTFKKKPTDLSKPVGASSAVAPT
FGLAGTPGITFQLLKKGNKGKVEAKEIVVPSDTNFAKVASKQDDAAARERNFIKQRVLQY
EADSAEAELSGGNVYLEQERLQVIRNRPLSMDDIDRNFGTRGGNTLQSGKDKGRTGAASG
DRPGTSVILGQRGGGRGGPGRGRGGRGNTSGRTLFRG
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtcgttcgagcgctgcgagttccgcctcggcaacgggacgcggaggaggatct
gcgggacggggtcgcggcaataccaagggacgcggcaagacaggagggcgaggtcccaag
cccaaggccaatgcttccgtatcgaaggaaacaggagcatccactccgagcttacaaacc
gacagcagcggcaacgcaaacaaagcgcttccaacgaaggatcgtggtggctccggaaga
gaaaacaggacgaaaccaaatcctgtcgggtccaaaacgcaggggaaccagaaacgtaac
acacccaatccacccactctatcgcccaaggatcagcagcgccatcaagaaatagaaaaa
cacgcacaggaagtggctgccgaaaaagcgcgggctgtagcgttggctagagcccaagct
gcggcaatcaaagtccgggaacagaagcaggccgatgtggatcagaaggttcgggaggcg
cgggatctgttacagaacgtgatcaatgccactcacgcgcatcaaaggacacgggcggac
atggagccggaaaccctgcaggcttttcgcaaaacgtttcaggccaacaagaagaatcta
aaaacagatttgaaaaagtgtaccacctttgtgaaaaaggtcaagagcggtgtcgcgtgg
tctatgaaaccagaggatattgtgaaggacgtgtcaacgctcaatttaagtcgctacgtg
gaagaagtagccaacgggatcttggaaagctctactaaacccaaggtgtctgagttgcca
agcgtgctgtcccttgtcaccacaatgcaccaacggtacgaagatttcttatcgatgctg
gtaccggccttgtggaaagtggtgaacgccaaaccaacacccgctatggcgaagctccga
cgcttgtacgtccgaatcttgacggagttggtcctcaacggaatcgtgacggaaaccaaa
cctctgattgcatgtgtcaccgacgcgagtggagcgaacgcgtcacaaggaacgaactgc
tccgtgcaagacgccaatctgatggtagcctttagcaaggcggccggctttgagttgtta
gatattgtccccacctcggtccattccgcgatcaagctgattggaaattacaatgagacg
gaagcctgtaccccagacggtgcggatgctatctttccttcccaggatgtgataaagcaa
gcctatcctgtcgttgaacaaattccgtcggttttgacagaaagagccgtggctgcacaa
gtttccgaagtgttggtcacccactgtcgggctgcctaccatgccttgtccaccaatctg
acacaaacccaccgtaaactgctgcagttggagaaacgctgcgagcaagaccgcctcttg
tcggggtccttgacagaagcccgagaaaagggattagtggatgcccgtaaactgcaagaa
tcgttgcagaaggcggtggatgctctggcggacgtcttggacgaaaggttgcctattttg
cagcagcaagaagaagacggtgatgcagacggtagtggtggactagaagtgtggacaaaa
ggaactgacggggaagaagacttgggcccgttcgacgacgaagaaatgcgaactttttat
tgtgacgtgccagatctgctcaccaccactccacctgctttgctcggtctggcaccagaa
gctatagagtcgcggaaattagacaaccaaagaaaatatggcgccgaaggagaagttgtc
gacgaaggtgacgacggcaccgaattaccgctaggctcgcaagaagaattcgaaaatgaa
gaggacgaggaactgaaggacgaggaagacccagagatcgaggagcaaaaggatacaccg
cactatcgcttaatggttcttcttgaggaagaactaccagaatgccatcgtcgtgagcag
ctcgacgagttaacagagaagttttgcaccaaccacgggtctagcaaaaactcgaggaaa
cgtttgtctcgaacacttttcttggtacctcgctctcggctggatcttttgccctactac
tcacgcatggcagctaccgttgatcgcgtttggacggatattgcatcacctttggtggcg
gatttggaacatcaattccatggtcaagcaaaattcaaaaaaaaccaaaacatcgaatca
cgtatgaaaacagctcgctatatcggggagctaaccaaattccgagttgcacctcccata
gtattcctacgatgccttaaacgttgcttggaggactttacgggaaataatgtggacgtt
acgtgctgtctgctggaatcatgcggacgatttctcttccgtctcaagcacacgagcgga
cgtattgcgacgcttatggaaacaattactcgcctgagtaaagccaagaacctggatgag
cgccatcagtctttgattcaagctgcgttttatgctgtcaagcctccaccgagcggtccc
cggaagcagcaaaaggaatatcccccattggaagcgtacgtcagatatttgctaatggtt
cgtttggaacctacagacacgtctgtttcttttaccgcgaaggagctcattcgactaccg
tggagcgatccagaacagcagtgtggtgcacttgtttgtcgcatcatgctgaaggcttgt
agaaaaggccgataccgaacaatatacgcgattgcggccgtggcggatcgactacgacct
caacgatcagcttgtgaagccccggttcgactggtagacgcgctactcgaggaactgcga
tgggctttggaacatccagattttcgagatcaacaacgtacaatcacgtatgctcgtctt
ttaggggaactgtattgctcgtcacaagtaacggggcagcttgtcataaaccaactctac
gatttcatcaacatcggtcacgagattccgaatgctttgcgagaagcgagtcaaaagctg
gcggcatctcaaggagaggagagtggggaacagctcccattattcacctcaatgacagga
gtctcccaaaccattaaggaggatgaggaaatggaggatgacaacctcgatgccgccgaa
caggctcctgctccgccgacaccggtggcagtttcgcagcattcaaaatacgacccacgc
gtgccgtcgttagaggatcccccaaatgcttcttatcgtgtgaagcttgtttgtacggtg
cttgaagtagtcgcgaagtctataatgtcgagaagcgttctgccccgtatgagaggtttt
ctggcagcttttcagagataccttttcacaaagactacgctcccaacagacgtggagttc
tctttactagatacttttgacatccttgactctcaatggaaacgttttaccaggacgagt
cgagacaaagaactggaggaaggatcggaaagcggctttccacgatattccagttggctg
gatgcacacaatgtgaccgtggcgttcgaagaatcggacgcactcctcgagctccaaaag
cgcaaccatgttgaaaccttggcggacgaatcgaaaacacttggtgatcttcatgtgagc
atggatgcacattccctgaatgacgattcagcatcgctgttggaagatgaagaggacgat
gcttccctatctgttagtgccaaaggtagcgttgcggaagacacgaacgatgatgaaacc
gagtcaggagacagtgatgaagactacgaaggtgtgaccgaagacgatatcgatagcgaa
tcaggtggcaattccgaagaagaagaagaagagtttgacgaagaagcttatatgcgtcag
ctggaagaggaagcctttgaacgagagctccgacgagtgaccattgaagccttggagaag
ggcaagaacacttcgcgcaagttggttgctgaaaacatggtttcgggatcacagactttc
aaaaagaaaccaacagacctgtccaagccggttggcgccagctccgcggtggctccgacc
tttggacttgccggtactcccggcatcacgtttcaattgttgaaaaagggaaacaaagga
aaagtagaggcgaaagaaattgtcgtgccctcggatacgaatttcgccaaggttgcctcc
aagcaagacgacgccgcggctagggaacgaaactttatcaagcaacgcgtgttgcagtac
gaagccgacagtgccgaagcggaattgtctggggggaatgtgtatctcgaacaagagagg
ttgcaggtgattcggaatcggcctctttctatggacgatattgatcgcaactttggaacc
agaggtggtaatacgcttcaatcgggcaaggacaaaggcaggacgggtgcggcttccggt
gaccgtccgggcacgagtgtgatattgggccaacgcggtggtggacgaggaggcccgggt
cgaggcagaggcggtcgcggaaacaccagcggacgaacgctcttccgaggctaa
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integrated database retrieval system
