Phaeodactylum tricornutum: PHATRDRAFT_50138
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Entry
PHATRDRAFT_50138 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K06672
cohesin loading factor subunit SCC2
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_50138
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
PHATRDRAFT_50138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PHD_2
PHD
PDS5
PHD_5
INTS1_R4
Cnd1
HEAT_2
YrzO
Motif
Other DBs
NCBI-GeneID:
7198842
NCBI-ProteinID:
XP_002185061
JGI:
50138
UniProt:
B7GD31
LinkDB
All DBs
Position
27:complement(162501..167882)
Genome browser
AA seq
1699 aa
AA seq
DB search
MSTTPKLMVDPFTEAVERIVLRVTMVEGREGDYAYKGTAVDGPLLPQELAELSLLCTRQM
ALEGAKTDAQGFAAVEVEQLAALVALLDQHINSAIGIQLLANAVKLLESELSPSKSSQLM
DQWLQRGGAGSTQLQVLRMGLQAACVVLLIAVCSGVDRRAVNEDAIEAAITLYRSHLSKH
IVPAWNQTGHMLHIKSLDEKAGLASPSKKRRLSTDENYSSASSGLVKDLKKVYKHIACTV
RLQLTLTERLELLIRKVPLDDQQILMLTNGSLIGLEIDCGAPKLGTFAKDSPPPPQQLQL
ACVNLVSSAFRTYPSHRDTILEDVFPLMLRLPTGKKSLRALGVNYGSASSPTTLAALNAT
LVDVTNTQPNIQTITYLILSCIQACVVRPVLDTSDDSPQGQIVSGLKACRAVSEVFVSQL
LKRCSRTKDGALEYRPILANIVEDLLQLTLIPQFPAAELVLVCISQRLNQELSAASSSAK
TKSHFPPEPTFLTIAFDILGKVMAYQARVLATSRSKPLAIATTIENEPTILQNEVHEVHL
ACHCGDTRADALMIQCDHCRTASHCSCVGVAPDDIPEEWFCDGCRLGRIALRERRQLGVE
AATGIVDEVFTYRHSFLSRLSHRIGVAELVDATQFHLSRWVDEIERNSRSTIDQQATFRQ
LVQELLTRWEAPVGALGPGTDSLTEEGSSRITLHLLARTSPLCLSFRHQVSLILKLMADE
SVPMLRKLAVKTIEKNSSYYTSVSVFSLQVADGDPQLMLLPIVTKAVSRRLTDDSISVRE
ATVSLVGAYVVQFPAVANAFHSSLLDCLVDVGVSVRKRAVRIFQEILISNPRYRGRSSVC
DSMITRAIDPKEEDGVRDLIFELFTKLWLEYDDDVITSPTVPLPKPASIPSSPDGNTRAL
LLEGFALGSSVVTPTPPALSERYKHSRSSQKRVDIAAEQMMEVVRASGSGERLHSLIVEL
LAGSNNARACKSSERKQRSALDQKQCSCLVESLFELLLQVEEQRSIRTSRVGKDVAATLQ
TIAVFANLAPNSVFEHFDTIGPYLKADNGVSFDDESKIVGAVCDIIVCLSPNLKYENIQQ
MASGTLAKDIVLVIYKFGSSALGSAIKALSSLGHHPDGDENSVFRKKLLEMARTFYCYLL
RKETVEDFSNTDDKTRSNTHRALTVLGLVCRYHERPYGVTEEESEVDDSVAEISSSELTY
ANLIVGCYRIFSTYLQTLDAPTKCSALRALGGLFVSQPRLMLELEQVGLIEHVMSEESHI
SLQLESLQCWKTILLAEERRIDGGVATEKLEKNERVTLSNRISGDQDGDATLFGGVLTNH
ADRLFEMSQSKDRRVRYAALDLIGLLLRQGLVNPNECIPFLFALQGDVENAAIRSLALHL
LMKEGERRPDALRQRICVGAKQAYDFQRRIYSQKDAASALITVRRGRVQGTECIFGSVFR
NCISKSQKQRRGLFKNLLSFFETAEVNVETPFAKNVHLLKISGGGQANGSDLSLLSFTSQ
ILAYLPYAAASDPLFIIHHIGSIVTIQGTQIVDAFAALLRPAGLASNDEYDEANVTEDAL
EKVARSKFPSRTQEASALSKIDQLKFLHLCRRGAAIVLLLRLKAHLRRSYNLSEFRCLEY
DPNAKDRIAEKGISKVDNSPPFDASVPADLIHSSDSFIHWDTMIREYAEFRQLMRKENSF
DIPMGDVSDEQRIFEEVVD
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgacgcccaagctgatggtggacccgttcaccgaggccgtcgaacgcatcgtg
ctccgcgtcaccatggtcgaaggccgagaaggcgactacgcgtacaaaggcaccgcagta
gatggacccttgctgccacaagaacttgcggaattatccctgctctgtacacgccaaatg
gcactggagggagcaaaaactgatgcgcaagggtttgccgccgtcgaagtggaacagctt
gctgcactggttgctctactcgatcagcatattaattccgctatcggaatccagcttctc
gccaatgcggtgaaattgctggaaagcgagctttccccgagtaaatcttcgcaattgatg
gaccagtggctccaaaggggtggagccgggtccacgcaactccaggtgcttcgcatggga
ctccaagctgcctgcgtggtgcttttgattgccgtatgctcaggggtcgaccgacgagct
gtcaacgaagatgcaatagaggcggcaattaccctttatcgctcccacctttccaaacac
attgttcccgcctggaaccagaccgggcacatgctacacatcaagtcgttggatgagaag
gcagggcttgcttctccatcaaagaaacgacggctaagcaccgacgagaactactcctcg
gctagtagcggccttgtcaaagatctcaagaaggtatacaagcacattgcttgtactgtt
cggcttcagttgaccttaacggaacgtttggaactactcattcgaaaagtgcccctagac
gatcagcagattctcatgctgactaatggatcgctgataggtctcgaaattgattgcggg
gcgccgaaactcggtacctttgccaaagactcgcctccaccgccacaacagcttcagctc
gcttgcgtcaatcttgtctcaagtgctttccgtacttacccgtcccatcgggacactata
ctggaagacgtgtttccactcatgctacgacttcccacagggaagaagtctctccgtgct
ttgggcgtcaactacggttcggcttcgtcaccgacaactcttgctgcgctcaacgccacg
ctggttgatgtcaccaacacacagccaaacattcagacaatcacttatttgattctctca
tgcatccaagcctgtgttgttcgaccggtgctggacaccagcgacgattctccacaagga
cagatcgtctcgggcttgaaggcgtgtcgtgccgttagcgaagtctttgtttctcagcta
cttaagagatgttcccgtaccaaagacggtgcactggaatatcgaccaattctcgccaat
atagtcgaagacttgttgcaacttacgctgataccccaatttccggcagcggagctcgtg
ctggtttgcatttctcagcgtttgaatcaggagctgtcggcagcgtcttcatctgcaaaa
actaagagtcattttcctcccgagccgacttttctgacgattgctttcgatatcctaggg
aaggttatggcgtaccaagcccgtgtactagccaccagtagatccaagcctctggcgata
gcaaccacaattgagaacgagcctacaatccttcaaaacgaagtgcatgaagtgcaccta
gcttgtcattgcggagataccagagctgatgctctgatgattcaatgcgaccactgccgt
accgcctcgcattgctcttgcgtcggtgttgcccccgacgatattccagaggaatggttt
tgcgatggttgtcgtctgggacgcatagccttacgagaacgacgacagttgggggttgag
gcagcgacggggatcgtggacgaagtgtttacgtaccgtcattcctttttgtccagactt
tcgcaccgcataggtgtggcagaactggtagatgcgacacaatttcacttatcgcgatgg
gtggatgagatagagcgcaatagtagatccaccattgaccagcaagcaacttttcgccaa
cttgttcaggagttgttaacgcgttgggaggcacccgtcggagctcttggtccaggtacg
gactcgctgacggaagaaggctcatcgcgaatcaccttgcaccttcttgcccggacatcg
ccactgtgtttatcattccgccatcaagtttcgcttattctgaaactcatggccgacgag
tctgtaccgatgctacgcaagctggcggtgaagactattgaaaagaattcctcatattac
acatctgtttctgttttttcccttcaggtggctgatggtgacccgcagctcatgcttctc
ccaattgttacgaaggctgtctcacgcagactcacagatgacagcatatcagtccgcgag
gccacagtctccctcgttggtgcttacgtagtacagttcccagctgtcgcgaatgctttt
cattcatcgttgcttgactgtctcgtggacgttggggtcagcgttcgcaaacgagccgtg
agaatctttcaggagattcttatatcgaacccgcgctatcgaggtcgctcgtccgtttgt
gattccatgattacccgagctatagatccaaaggaggaagacggagtccgagatctgatt
tttgaactttttaccaaactctggctagagtacgatgatgatgtcatcaccagtcctaca
gtacctttgcccaaacctgcttcgattccaagctctccggatggaaataccagagcactc
ctattagaagggtttgcactagggagctccgtcgtcacccccactccgcccgcactgagc
gaaaggtacaaacattctcgctcaagtcagaaacgggtcgacatcgctgctgaacaaatg
atggaagtggtcagagctagtggttctggagaacgcttgcattctctaattgtcgagctt
cttgctggttctaacaatgcgcgagcttgcaagtcttcggaacgcaagcagcggtcggct
ctcgaccaaaagcagtgttcttgtttagtggaatctctgttcgaacttttgcttcaagta
gaagagcagcgatccatccgaacctctcgtgttgggaaggatgttgctgctaccttacaa
acgattgccgtcttcgcaaatttggctcctaactcagttttcgagcatttcgatacaata
ggtccctatctcaaggctgacaacggcgtttcctttgacgacgagtccaaaattgtcggt
gcagtttgtgatataattgtgtgtctgtctccaaacctgaagtacgagaacattcagcaa
atggcctcagggacgctggcgaaggatatcgtgctggtcatttacaaattcggttcttca
gctctgggatctgctatcaaggctctttcgtctttggggcaccatccggatggtgacgag
aatagcgttttccgaaaaaagcttctcgagatggcacgaacattctactgctaccttttg
cggaaagaaacggtggaagacttctcaaataccgacgacaaaactcgtagcaacacccac
cgggccttaacagttcttggtttggtgtgtcgttatcatgaacgaccttacggggtaacg
gaagaagaaagtgaagtggacgacagtgtggctgaaatttcctcttctgaattgacttac
gcaaacctcatcgtgggttgctatagaattttttcaacgtacttgcaaacgctagatgca
ccgacaaagtgctcagcccttcgtgcactcggaggcctttttgtttcacagcctaggctg
atgctagaattggagcaagtcggtctcatcgagcacgtcatgtcggaagagtctcacatt
agtcttcagctcgaatcacttcagtgctggaagacaattttgttggcggaagaacggcgt
atcgacggcggagtcgccacggagaagctggaaaagaacgaaagagttactttgtcaaac
cgtatctccggggatcaagatggcgacgccacgctatttggaggggtgcttacgaaccac
gcagaccggctctttgaaatgagccaatccaaggatcggcgtgtaaggtatgccgcgttg
gatctaattgggctcctactgcgacaagggctcgtaaatccaaacgagtgcatccctttc
ttgtttgcgttacaaggcgacgtagagaatgccgccatccgtagtttggcccttcatttg
ttgatgaaagagggagagcgccggcctgatgccttgcgtcagcgcatatgtgttggagcg
aagcaagcctatgacttccaacgccgtatttactctcaaaaggacgcagcgtctgcattg
atcactgtccgacgaggccgcgtacagggaaccgaatgtattttcggcagcgtttttaga
aattgcatttccaagagccaaaagcaacgtcgtggactattcaagaacctgctttctttc
ttcgaaaccgcagaagtgaatgtcgagacaccctttgccaaaaatgtccacctcctaaag
atttctggaggtgggcaggcaaacggaagcgacttgtcccttctatctttcacgtcacaa
attcttgcgtatctgccatatgccgcagccagtgatcctttgttcatcatccaccacatt
ggctcaattgtcacaattcaagggacccaaatcgtcgacgcatttgctgctttattgcgc
cctgctgggttagcaagcaacgatgaatatgatgaagctaacgtgacagaagatgcactc
gaaaaagttgcccgtagcaagtttcctagccgcacccaggaggcgagtgctttgtccaaa
atcgatcaattgaaattcctacatctatgccgcaggggtgcagccatagtcttgctactg
cgcctcaaggcgcaccttcgccgctcgtacaatttgagcgaatttcgatgccttgagtac
gacccaaatgctaaggatcgcatagcagagaaaggaatttcaaaagtcgacaattctccg
ccattcgatgcatcggtgcccgccgatctcatccactcctctgacagctttattcactgg
gacactatgattcgagagtatgccgagttccgtcaactaatgcgcaaagaaaacagcttt
gatatccccatgggggacgtctcggatgagcagcggatatttgaagaagtcgttgactga
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integrated database retrieval system
