Phaeodactylum tricornutum: PHATRDRAFT_50229
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Entry
PHATRDRAFT_50229 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATRDRAFT_50229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_50229
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHATRDRAFT_50229
mRNA degradation factors
3'-5' decay
Pan complex
PHATRDRAFT_50229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
7199010
NCBI-ProteinID:
XP_002185195
JGI:
50229
UniProt:
B7GDD9
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Position
28:complement(52872..54593)
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AA seq
520 aa
AA seq
DB search
MDDFNSQFGKLSTTAAEWKPSGNADNDSDVQLNAKVVKEFVPGQGWIASSTKPAAREANI
PSSVREYTLDAANSSARFETTVPTGPFPSPMPSFRALQTLGLGDDLWRHYRDISLESCRQ
MDPDDQRQKAVPLPYCNAYCLDDISQRGRSSFGYPSATFHVTSREDGNAYCLRRFDNVRC
VSPKIASTVSDRWTSVAVVQEHPGIAPFYQCFMAQRAVFFVHQYIPGARSLKERLGGPLS
ECVLWSCISQLVSALRTIHGRNLAARTLQLHHILSNTDSAASRLRVRLNCLGIADVLEFE
ARKKVADLQRHDVRDLGRLILSLASGTEITHSTDMETVGSCEQFLAQNYSPDLHNLAMTL
IRSTPQPPSILDVSRVVAQRAFDEQDAAYQSFDRMERALSAEYDSSRMLRILLKLSYVNE
RPEFGPNRRWAQSGDCYALTLFRDYVFHQADGGGYPVMDLGHVISALNKLDGADEEKIVL
SSRDGKSLMVASYAEIARCLENAFQELCVGAVSHDALHYC
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggacgacttcaactcgcaattcgggaagctctccactacggcggcagaatggaagcca
agcggaaatgcagacaacgattctgatgtacagttaaacgccaaggttgtcaaggaattt
gtaccaggccaaggatggatcgcctcgtcgaccaagcctgctgcgcgtgaagcgaatatc
ccttcgtcggtgagggaatatacattggatgcggcaaattcctccgcgaggtttgaaacg
acagttccaacagggcctttcccttctccgatgccaagcttccgggccttgcaaactctg
ggattaggagacgatttgtggcgacattacagagatatttctttagagagctgtaggcaa
atggaccccgatgaccagcggcagaaggcagtccctttaccttattgtaacgcctactgt
ctagacgatatctcccaacggggacgctcctcgttcggttatccatcggcaactttccat
gtcacttccagagaagacggcaatgcttactgtctgcgccgtttcgacaatgtgaggtgt
gtgtcacccaaaatagcctccaccgtatcagaccgatggaccagtgtcgcagttgtacaa
gaacatcccggcattgcacccttttaccaatgctttatggcccaacgtgctgtgttcttt
gtgcaccagtacatacctggagcgcgtagtctcaaggaacgcctcgggggtccgttgtcg
gagtgcgtcctgtggagttgtatctcccaacttgtgtcggctttacgaacaattcacgga
agaaatttggccgctcgtactttgcaacttcatcacatcttatcgaatacggattcggct
gcaagtcggctgcgtgtgcgtttgaactgtttgggcattgcagacgttctggagtttgaa
gcgcgcaaaaaggtggccgacctgcagcgacatgatgttcgggatcttggaaggttgatt
ctctcactagcgtcaggtaccgaaatcacccattccaccgacatggaaacggtaggatca
tgtgaacaattcttggcacagaactactcgccagacttacacaatttagccatgacattg
atcaggagtacacctcagccgccgtcgattcttgacgtaagtagagttgtcgctcaacgg
gctttcgatgagcaagatgcagcttatcagtcctttgatcgcatggaacgagcgctatcc
gcagagtacgattcaagccggatgttacgaatcttgctgaaactaagttacgtgaatgaa
cgacccgaatttggcccaaatcgaagatgggcgcagtcgggagattgctatgctctgacg
ctatttcgtgattacgtctttcaccaagctgatggtggtggctatccagttatggattta
gggcacgtcatatcagcgttgaacaagcttgatggcgcagatgaagaaaagattgttttg
tcgtctcgggatgggaagagcctaatggtagcaagctacgcagagatagctcgatgcctg
gaaaatgcgttccaggaactatgcgtgggcgcagtatcgcatgatgcgttgcattactgt
tga
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