KEGG   Phaeodactylum tricornutum: PHATRDRAFT_50310
Entry
PHATRDRAFT_50310  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12842  U2-associated protein SR140
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATRDRAFT_50310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pti03041]
    PHATRDRAFT_50310
Spliceosome [BR:pti03041]
 Complex A
  U2 snRNP components
   U2 related factors
    PHATRDRAFT_50310
 Complex B
    PHATRDRAFT_50310
SSDB
Motif
Pfam: Surp RRM_1 RRM_7 CID Nup35_RRM_2 RRM_10
Other DBs
NCBI-GeneID: 7199056
NCBI-ProteinID: XP_002185160
JGI: 50310
UniProt: B7GDN3
LinkDB
Position
28:260839..263325
AA seq 699 aa
MSRHRAGASAPIDLSSSDEEDAFSALNTKHKIPPGISTRKADTSQSQATAKLPASVTSSM
KRHHVELSDSRKRKMDALLSELEYEKNNISIKPHRFVPEKKGSFVEPGEELLTTNIFVGN
LSPTLTEEQVAEVFRQFGALYSVKIMWPRTPEEKMRNRHTGFVCFMNRRDAEDAMDACSE
ADPFNVGRPLMMRWGKNVKRTGQRPPLESDLAYRKKVPNIADTPARQVNNDNHIDRDTIV
HESNIIRVIAPSDRQRAQFISTVASFVSKDGLAFEKNLIDRERNNVQFNFLRWQSNGDTI
EKDEHIFYRWRVYSFCQGDGFYSWKTIPFRVYEPGGCHWIPPVIDPDAARFEMEHEREKE
EAIERQKNQRRVQHGRRGFSTGRQLEQARRGGSDGGAVMAPEEMIDFNRLCRDNLCASRE
AICSAMAFCFEKSVAAKQISILLKDLLLDKGNAVSVETRIARMYLMSDILFNSQQPGVRN
AFLYRDAVERMASEVFTFLGDYGNTIGRFSRTKLASAVKAVLGAWTNWGVYNPTFIDELD
DRFEGKELVPESEYGANPIANEDDDKIEEVQMETTPAVRLNPQGDWVTVMEGENDETQGQ
SSRLTKQDKGECSDHTASDDSDADGVTLEECDNVDGEPVGDILPLKSDADNNEDGEPLGE
TFDHTDGAPLEGSDLDGSPLEDEVSHDVALESELDGEPL
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgagcaggcatcgtgcgggcgcctcggctccaatcgatttatcgtcatcagacgaagaa
gatgccttttcggctttgaatacgaaacacaagatcccacctggaatttcgacaaggaag
gctgacacctcgcaatcgcaagccaccgctaaattacccgcttctgtaacctcttccatg
aagcgacaccacgtcgaactaagcgattcacgaaaacgaaaaatggacgccttgctttcc
gagttggaatacgaaaagaacaacatatccatcaaaccgcatcgctttgtcccagagaaa
aagggatcattcgtcgagcctggtgaagagcttttgacgacgaatatattcgtaggaaac
ttatcgcctaccttgacggaagaacaggttgcggaggtttttcggcaattcggtgcgcta
tactcggtcaagattatgtggccgcgaacgccggaagaaaagatgcggaaccggcacacg
gggtttgtgtgctttatgaatcgccgagatgccgaagacgctatggacgcctgcagcgaa
gcggacccgttcaacgtgggacgcccgctgatgatgagatggggcaagaacgtaaaacga
actggtcagcggcctccgttggaatctgatctagcttacaggaagaaggtgcccaatatt
gctgatacacccgcgaggcaagtcaataatgataaccacatcgatcgtgatactattgtt
catgaatcgaacataattcgtgtgattgcaccttccgatcggcaacgagcacaatttata
tccaccgtggcttcgtttgtgtctaaagacgggctcgcttttgaaaagaatcttattgat
cgagagagaaacaatgtacagttcaatttcttgaggtggcaaagtaacggagatacgatc
gaaaaggatgaacacatattttaccgctggcgagtgtattccttttgtcaaggagatggc
ttctacagctggaagacgattccgtttcgtgtgtatgaaccaggcggttgtcactggatt
cctcctgtgattgaccccgatgctgcacggttcgagatggagcacgaaagagaaaaagaa
gaggccatcgaacgccaaaaaaatcagcgtcgcgttcaacacggtcgacgcggcttttct
actggacgccagcttgagcaagctcgccgtggtggatccgatggtggcgctgtcatggcg
cctgaggaaatgattgacttcaacagattgtgccgcgataatctttgcgcatctagggag
gctatttgctcggccatggccttttgcttcgagaagagtgtggctgcgaagcagatttct
atactgttgaaagacctgttgctcgacaagggaaatgccgttagcgttgagaccagaatt
gcccgtatgtaccttatgtcggacatcttgttcaactcacaacaaccaggtgtacggaat
gcatttttgtatcgagatgccgtcgagcgcatggcatcagaagtctttactttcttgggc
gactacggtaatacgatcggtcggttttcgcgtactaaacttgcatcagccgtgaaggcg
gtgcttggggcgtggaccaactggggtgtgtacaatcctacttttattgatgagctcgat
gaccgatttgaagggaaagaacttgtcccggaaagcgaatacggagccaaccctattgca
aacgaggacgacgataagatcgaggaggtacaaatggagacaacgccggctgttaggttg
aatcctcagggcgactgggtaacagtgatggagggagaaaatgatgagacgcagggacag
tcgtctcggttgacgaagcaggacaagggagagtgtagcgaccacactgcatccgacgac
agcgatgctgatggtgtaacattggaggaatgtgacaacgtcgatggcgaacctgttgga
gatattctgccgctcaaaagtgatgccgacaacaacgaagatggtgaaccccttggcgaa
acctttgaccatactgacggtgctcctttggaggggagcgacctagatggtagtccttta
gaagatgaagtctcgcatgatgttgctctcgagagcgaactagatggcgagcccttgtaa

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