Phaeodactylum tricornutum: PHATRDRAFT_50326
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Entry
PHATRDRAFT_50326 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATRDRAFT_50326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_50326
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_50326
03009 Ribosome biogenesis [BR:
pti03009
]
PHATRDRAFT_50326
03016 Transfer RNA biogenesis [BR:
pti03016
]
PHATRDRAFT_50326
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHATRDRAFT_50326
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PHATRDRAFT_50326
Spliceosome [BR:
pti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PHATRDRAFT_50326
Complex C
U4/U6.U5 tri-SnRNP related factors
PHATRDRAFT_50326
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
Pre-60S particles
Helicases
PHATRDRAFT_50326
Transfer RNA biogenesis [BR:
pti03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PHATRDRAFT_50326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Latarcin
Motif
Other DBs
NCBI-GeneID:
7198985
NCBI-ProteinID:
XP_002185257
JGI:
50326
UniProt:
B7GDQ8
LinkDB
All DBs
Position
28:complement(311233..315060)
Genome browser
AA seq
998 aa
AA seq
DB search
MADLNDLFGAFDGNDSDHGSSSLQDEPAVLPKKPRLEERNSQRSSSPPEDELSNIRSYSA
FPKNLPAGFAPPRVEPPQEPAKTYAFKLDPFQAQAVAYIDKEESVLVAAHTSAGKTAVAE
YAVAKSLKAGQRVIYTSPIKALSNQKFRDLQEEFDDVGLMTGDITINPDATCLVMTTEIL
RSMLYRGSELMREISWVIYDEVHYMRDAERGVVWEESIILLPHRVRFVFLSATIPNATQF
ADWIAEIHHQPCHVVYTNYRPTPLQHYIFPQGGEGLHLVVDERGKFREANFQKAMASLQS
GNGNAKKRGRGKQGGGAGQFADLHRIVKLIMERNLNPCIIFSFSKKDCEKYALALNQEDY
TDDVEKDLVAQVYHNAIDSLSDDDRKLPQVEALLPLLKRGIGIHHGGLLPILKEIVEILF
TEGLIKALFATETFSIGINAPAKTVVFTNTRKWDGKDFRWVSSGEYIQMSGRAGRRGKDD
RGIVIQMVDEKMEPAVCKDMLYGAPNPLNSSYRISYNMLLNLMRVEDVDPEYLIRASFHQ
FQREKDAPGLIADAEILESQAETVDFQSEEEVTLVAEYYQMDQQLLLTRRKIGTIVRKPG
YVLKFLQAPGRFLDVILDGEEFGWGVLVSCKKRQGIGSGGEAGRIASLTNQPEYILDVLL
NCVDRHFDKNRKGKDEDAENVNLLIERLSAVRIFIPQDITTPEARRKVSTSVKEVSKRFP
DGIPLLDPVADLGINDDAFMTLLKRAETLTNLLAEHKLANDFVDSSRLELVQRYEKKADM
LERAKTLREEARNCQTMAMKDDLKKMKRVLKKLGHVDAGGVIQTKGRTACEINTSDELVV
VELIFGGIFNDLSVEQSVALLSCMTFDERNKNEDDPASGLKSFLSNPFYKLQEVARTVAR
VVISCGIDLNEDEFVDKFNPGMMEAVFAWCKGAKFIEVQKLTGSFEGTTIRTLRRLEELV
RQITAAAKAIGNHELEAKFEKGSELIKRDIVFCSSLYL
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctgaacgatctctttggagcctttgacggaaatgacagcgaccatggcagc
agctcgttgcaggatgagccagcagtactaccgaagaagccgcgactggaagaaagaaat
agccagcggagcagtagtccaccagaagatgaactatccaacatccgctcctattcggcc
tttcccaaaaacttacccgcgggttttgccccaccccgagtcgaacccccacaagaaccc
gccaagacgtacgcctttaagctggatccctttcaggcgcaggccgtggcctacattgac
aaggaagaatcggtactggttgcggcccatacatcagcgggaaaaactgccgtggcggaa
tacgccgtcgcgaagtcactcaaagcgggacagcgcgtcatctacacgtccccgatcaag
gctttgtcgaatcagaaattccgggatctacaggaagaatttgatgatgtcggactcatg
accggtgatatcacaatcaatcccgacgctacttgtctcgtcatgacgacggaaattctg
cgcagcatgttgtaccgtggcagtgagctcatgcgagaaatatcgtgggtcatttatgac
gaggtacattacatgcgtgatgccgaacgcggcgtcgtttgggaggagtccatcatctta
ctgccccatcgggtccgattcgtctttttgtccgccaccattcccaacgccacccaattc
gctgattggattgccgaaattcaccaccaaccctgccacgtcgtctacacaaattaccgg
ccaacaccgctccaacactacattttcccccaaggcggggaaggcctgcacctggtcgtg
gacgagcgtggcaaattccgtgaagccaactttcaaaaggccatggccagcttacagtcg
ggtaacggaaacgccaaaaaacgcggtcggggtaaacaaggtggaggtgccggccaattt
gcggatttacaccgaattgtaaaactcatcatggagaggaatttgaacccatgcatcatc
ttctcgttttcgaaaaaagactgtgaaaagtacgcgctagctttgaatcaagaagactac
acggacgacgtagagaaggatttggtggcgcaagtgtaccataacgcaatcgattcgttg
agtgatgacgatcgtaaattgccgcaagtagaggcactattgcctttgttgaaacgcgga
ataggaatccatcacggcggattacttcccattctaaaagaaattgttgaaattttgttt
acggaggggttgatcaaggcattatttgcgaccgaaacattttctatcggtatcaacgct
cctgctaaaacggttgttttcaccaatactcgaaaatgggacgggaaagatttccgatgg
gtatctagtggggaatatattcaaatgagtggtcgtgctggtcgtcgcggaaaagacgat
cgcggtatcgttattcaaatggtcgatgaaaagatggaacctgcggtttgtaaagatatg
ctgtacggtgctccaaatcctttaaactcgagctatcgaatttcttacaatatgcttttg
aaccttatgcgcgtggaagatgttgaccctgagtaccttattcgtgcctcatttcaccag
tttcaacgagaaaaggatgctccaggattgattgctgacgctgaaatcctagaatcccaa
gcagagacagtagactttcaatccgaagaagaagtgacgttggttgcggaatactaccaa
atggaccagcagcttctattgactcgacgcaaaatcggcacgattgtgagaaagccgggt
tatgttcttaagtttctgcaagctcccgggcgctttctggatgtcattcttgacggggaa
gagttcgggtggggtgttttagtctcctgcaagaagcgccaaggaatcggatcgggagga
gaagctggtcgcattgcatcattgaccaatcagcctgaatacattctggatgttcttttg
aattgtgtcgatcggcatttcgacaaaaacaggaaaggaaaggatgaagatgcagagaac
gtaaaccttcttatcgaacgcctttctgcggttcgaatcttcattccgcaagacatcaca
acccccgaagcccgtcgcaaagtctccacgtctgtcaaggaggtttcgaagcgctttcca
gatggtatccccttgctcgaccctgtggccgaccttggcatcaacgatgatgcttttatg
acactactgaagcgggctgaaacactgacaaatctcctggcggaacataagctggcgaac
gattttgtggattcaagtcgccttgaactagttcaacggtatgagaagaaagctgatatg
ttggaacgggcaaagacattacgcgaagaggcgcgcaactgtcaaacgatggcaatgaaa
gatgatctcaagaagatgaaaagagttctcaagaagctcggccatgtcgatgcaggcgga
gtaattcagacgaaaggtcggactgcatgtgaaattaacacctcggatgagcttgttgtt
gttgagctcatttttggcggcatttttaatgatctttctgtcgagcaaagtgtcgcgctt
ctatcttgtatgacttttgacgaacgcaataaaaatgaagatgatcccgcaagtggcttg
aagagctttctgtccaaccctttttacaaacttcaagaggtagcacggactgttgcacgc
gttgtaatttcctgcggaatcgacctgaacgaggacgagtttgtggacaaattcaacccg
gggatgatggaggctgtctttgcttggtgtaaaggagcaaagtttatcgaagtccaaaag
cttactgggtcgtttgaaggcactacaattcgaactttgcgtcggctcgaagaactcgtt
cggcagattactgctgcggcgaaagccattggaaaccacgaactggaggcaaagtttgaa
aaaggaagtgaactgatcaaacgagatattgtcttttgcagctctctttatttgtaa
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