KEGG   Phaeodactylum tricornutum: PHATRDRAFT_50624
Entry
PHATRDRAFT_50624  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PHATRDRAFT_50624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_50624
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_50624
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PHATRDRAFT_50624
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     PHATRDRAFT_50624
SSDB
Motif
Pfam: Dev_Cell_Death YTH zf_CCCH_4 zf-CCCH Torus zf-CCCH_4 zf-CCCH_2 zf-CCCH_12 zf-CCCH_PARP12 zf-CCCH_3
Other DBs
NCBI-GeneID: 7199459
NCBI-ProteinID: XP_002185604
JGI: 50624
UniProt: B7GER0
LinkDB
Position
33:complement(<6033..7896)
AA seq 603 aa
MTAATSVLPKEPLTVNEVEYDFENFALEHGIPETLDPLPYRKEGSVFATGDEAKPVLTSA
KHDPRLRTVVCRHWLRDLCMKGTACEFLHQYDLSKMPLCRHGERCKIKDCPFRHISEANR
MECVFYSQGFCIHGPFCRYKHIRRAREDLPAVADFTLGLSQMQASKDGEKVTKRTAPKPN
EFYKISLCKHFLQGSCPFAENCHFAHGESELRKFPRKDENEEEGDGGDELTDNMFVNQDT
TTIDYFQGGASGGGKPNPILEPDQAKFYIVRAATHHDLAISTVQNEWYLQRKHAQAMNAA
YQDGKHQVMIFFTVSDSNHIQGAALLTAPGVYQKSSDNGKDPFCHRISLEWFRTTELPIE
TALGVASDLLLPTSSTQYCQDMSSTTGESLMKAIWNAPLVTLFESWSGEQEPPTPDALLT
DFRAPTDPAWPTIPGPGFIFGCSSDTMDECLGLGIFGLPSHMKAAASSIRPGASIFLFNV
TDRLLFGIFEALTHAKMNIEPSAFSKNPKAVSSPFPVQIRVRISLECPPLEDTDAILNDI
LRSRGQGRIGPLTHPQTEAVASLLANQCGALSYMLEYQQGIQEGVPVRAPPIALPPYKLS
KTI
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgaccgcggccacctccgtactgccaaaggaaccactcacggtgaacgaagtcgaatac
gatttcgagaatttcgcgttggaacatgggattcccgaaacactcgatcccctgccgtat
cgcaaggaaggttccgtttttgcgactggcgacgaagccaagcccgtcttgacgtccgca
aaacatgatcctcgcttacgtacggttgtgtgccgccattggctgcgtgacttgtgcatg
aaaggaacggcgtgtgaatttctgcatcagtacgacttgtcgaaaatgccactttgccga
cacggggaacgctgcaaaatcaaggactgcccctttcgacatatcagtgaagcgaatcgc
atggaatgtgttttttattcccaaggattttgtatccacggaccattttgtcgttacaag
catattcgacgagctcgggaagatcttccggcagtggctgatttcactttaggtctctcg
caaatgcaagcttcgaaagatggagaaaaagttacgaaacgaacagcacccaaacctaac
gaattttacaaaatctccttatgcaaacactttctgcaaggttcctgtccatttgcggaa
aactgtcattttgcacacggtgaatcggaactaagaaaatttccacgcaaagatgaaaac
gaagaggaaggcgatggtggcgacgagctgacagacaacatgtttgtcaaccaagacacc
actacaattgattacttccagggaggggcaagtggcggcgggaaacccaacccgatccta
gaaccagatcaagccaagttttacatcgtacgcgccgccactcatcacgatctagccatt
agtaccgtccaaaacgagtggtatctgcagcgaaaacatgcacaagcaatgaatgcggcg
tatcaagatgggaaacaccaggtcatgatttttttcaccgtcagtgactcgaatcatatt
cagggcgcagccttgctgaccgcaccaggcgtttaccaaaaatcgtcggacaatggaaag
gatcctttttgccaccgaatttccttggaatggttccgcacaacggaactcccaattgag
actgcactaggtgttgcttctgatctattgcttccaacaagttctacgcagtattgtcaa
gacatgtctagcaccacaggagaatcgctcatgaaagccatctggaatgctccgctggtc
acgctgttcgaatcctggtccggcgagcaagaaccgccaacaccggacgctctcttgacg
gatttccgagcaccgacggatcccgcatggccaaccattcctggaccgggttttattttt
ggctgttcgtctgacacaatggacgagtgtctcggccttggtatttttggcctccctagt
cacatgaaggcggcggcgtcgtcgatccgaccgggagcatccatatttcttttcaatgtg
accgatcgattattgtttggtatctttgaagccttaacgcatgcaaaaatgaatatcgag
ccctcagcattctcgaaaaatcccaaagctgtatcttctccttttcccgtacaaattcgc
gtccgtataagcctcgaatgcccgcctttggaggacacggacgcaattttaaacgatatt
ctgcgatcccgtggtcaggggagaattgggcctttgacacatccacagacagaggcagtc
gcgtccttgttggcaaatcaatgtggtgcgctatcgtacatgcttgaataccaacagggt
atacaagaaggtgttcctgtaagggctcctccaatcgcactaccgccttacaagctttcc
aagacgatttga

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