Phaeodactylum tricornutum: PHATRDRAFT_50978
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Entry
PHATRDRAFT_50978 CDS
T01075
Symbol
sCdc48
Name
(RefSeq) hypothetical protein
Organism
pti
Phaeodactylum tricornutum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
AAA_16
TIP49
AAA_2
AAA_33
CDC48_N
AAA_14
AAA_22
AAA_28
AAA_18
nSTAND3
RNA_helicase
ABC_tran
AAA_17
Mg_chelatase
TsaE
Viral_helicase1
Sigma54_activat
AAA_7
NPHP3_N
ATPase
ATPase_2
nSTAND_NTPase5
NACHT
AAA_25
Rad17
Parvo_NS1
AAA_24
IstB_IS21
NB-ARC
AAA_29
Zeta_toxin
Vps4_C
DUF815
Cytidylate_kin
Molydop_binding
APS_kinase
CDC48_2
Motif
Other DBs
NCBI-GeneID:
7201729
NCBI-ProteinID:
XP_002181088
JGI:
50978
UniProt:
B7G1T3
LinkDB
All DBs
Position
10:complement(857569..861072)
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AA seq
930 aa
AA seq
DB search
MVFSRPCLLVLAVLSLARSAGAVWAPRSIPLLTTSWAATAQRRDLTTAAWGVSESVTASS
ILRGGSTAAAADDDEDVRKSKKSSSKKKKKKKSKKDQVSEPLSSKAAASPFADPTKKPDL
STAILGGAEGRSAMQVFAYDSEEGHSVVGMTEAALEEMGLFEGDTVSIKGKRGKKTVASV
AIVADVDVSALQDGAGQPLQSIGMSLDAMKNAAVRAGDTVTVVPVPNVKFGKAVLILPYQ
DSLASLGVEDANVFDDYLKPYFEGKFRSLHRGDSFHADGPYGKLEFQCVEIDSVEVDGDT
ACVVVDDTVIECDGEPIDRSDHDDLEGAGYDMIGGASKHLAAVRELVELPLRHAELWRKL
GINPPRGVLLTGPSGSGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDA
EANADDYNGAIIFIDEIDSIAPKREKAGGEVEKRVVSQLLTLMDGLKPTSKVVVMAATNR
PGVIEPALRRPGRFDRELDMGIPDEQGRLEILQIKMRDMRLSDDVDLELLARNTHGYVGA
DLQQLCMEAALECIRGKMGLIDFDKDQVDKKILDSIVIEEKHFDHAMGIVAPSSLRESQV
EIPDVHWDDVGGLEDVKRELHETVQYPVEHAEKYIKFGMSPSKGVLFYGPPGCGKTLLAK
AIANECGANFISIKGPELLTQWFGESEANVRELFDKARAASPCILMFDEMDSIAKTRGSG
GAGGSEAGDRVINQILTEIDGVGARKNVFVIGATNRPDILDPAVIRPGRLDQLIYIPLPD
LKSRIAIFQAALRKAPMDPNVDLEVLARSTHGFSGADISEICTTASKLAIREAILAAEER
NKKIEEGEIDGDEGSSEVGGNMLITKSHFNFAMSRARRSVSEKDLTLFEEFAEKQKAGRG
EAASNFKFGDGSTADEDDADNGSLQDDLYS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggtcttttcgagaccatgcctgctggtactggcagtgctgtccttggctcgatcggcg
ggggccgtatgggctccccgcagcatcccattgctgacgacgtcctgggctgccaccgca
caacgacgggatcttacgacagccgcctggggtgtgagcgaaagcgtgacggctagttca
atacttcgtggaggttccaccgctgctgctgcggatgacgacgaggacgtacggaaatcc
aaaaagtcgtcctccaaaaagaagaaaaagaaaaagtccaaaaaggatcaagtctccgag
cccctttcgtcgaaagccgccgcctcaccctttgccgatcccaccaaaaaaccggacctc
tccactgccattctgggtggtgccgaaggacgcagtgccatgcaagtctttgcgtacgac
agcgaagaaggacattcggtcgtcggcatgacggaagccgccttggaagaaatggggctc
ttcgaaggcgataccgtatccatcaaaggcaagcgcggcaagaaaaccgtagccagtgtc
gccattgtagcggatgtcgacgttagcgccttgcaagacggcgccggtcaacccttgcag
tcgatcggtatgtcgctggacgctatgaagaacgccgccgtccgcgctggtgataccgtc
accgtcgtccccgtccccaacgtcaaatttggcaaggccgtgctcattctaccctaccaa
gattcgttggcttcgttgggtgtggaggacgccaacgtgtttgatgattacctgaaacca
tactttgaaggaaaattccgttccctacatcgcggggactcctttcatgcggatggaccc
tacggaaaattggaatttcagtgtgtcgagattgattccgtcgaagtcgatggcgatacg
gcttgcgtcgtggtagatgataccgtcattgaatgcgacggtgaaccaattgatcgtagc
gaccacgatgacttggaaggtgccgggtacgacatgattgggggagcgagcaaacacttg
gccgccgtccgtgaactagtggaactaccactccgccacgccgaattgtggcgcaagttg
ggaattaacccaccgcgaggcgtcctgctgacaggaccgtcgggatccggtaaaactgct
atggcccgcgccgtcgccgccgaaaccggagcctactttttcgtcatcaacggacccgaa
gtaatctccaaacgggctggcgagagtgaaaccaatctacgccgagcctttgaagacgcg
gaagcaaatgcagatgactacaatggtgccattatctttattgacgaaattgattcgatt
gcgcccaaacgtgaaaaggctggtggagaagtggaaaagcgtgtcgtgtcgcagcttttg
accctgatggacgggctcaaacccacgtcgaaggtcgttgttatggcagcaaccaaccgt
cccggtgttatcgaaccggcgcttcgtcgtccgggtcgcttcgaccgcgaactcgacatg
ggcattcccgacgagcagggccgcctagagattctgcaaatcaaaatgcgcgatatgcgt
ttgtcagacgatgtcgacttggaactgttggcacggaacacccacggttacgtcggggcg
gatttacaacagctttgtatggaagccgctctggaatgtattcggggaaagatgggattg
atcgactttgataaagaccaagtcgacaaaaagattctggattcgattgtgatcgaggaa
aagcattttgatcacgccatgggcattgtcgctccctcctcgctgcgtgagagtcaagta
gaaatccccgacgtacactgggacgatgtcggtggactggaggatgtaaagcgagagcta
cacgagacggtgcagtacccagtggaacacgccgaaaaatacatcaaattcggtatgagc
cccagtaaaggtgttttattttacggccctcctggttgcggaaagactctcttggccaag
gcgattgccaacgaatgcggggccaactttatcagcatcaagggaccggagctactgaca
cagtggtttggagagagtgaagctaacgttcgtgaactctttgacaaggcccgtgccgcg
agtccttgtattctcatgtttgacgagatggattcgattgccaagactcgaggtagcgga
ggcgccggaggaagcgaagcgggagaccgtgttatcaatcagattctaaccgagattgac
ggtgttggagcacggaaaaacgtgtttgtcattggtgctaccaatcgaccggatattctc
gacccagccgtcattcgtccaggacgccttgatcaactgatttatattccgctgccagac
ttgaagagccgtatcgctattttccaagcggcattacgaaaggcacccatggaccccaac
gttgatctggaagtgctggctcgatcaacacacggattcagtggggctgatatttccgag
atctgcacaacggcttcgaagcttgctattcgcgaagcgattctggccgcggaagaacga
aacaagaagatcgaagaaggcgaaattgacggagacgaaggttcgtcggaggtcggaggc
aatatgctgattacgaagagtcatttcaattttgccatgagccgagcccgccgaagtgta
agcgaaaaggacttgacactgtttgaagaatttgcagaaaagcaaaaagccggacgtggc
gaagcagcgagcaactttaagtttggcgacggatccacagccgacgaagatgacgccgac
aatggctctctacaagacgacctgtattcctaa
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